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View Structure Prediction Details

Protein: gi|113564476, gi...
Organism: Oryza sativa Japonica Group
Length: 129 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113564476, gi....

Description E-value Query
Range
Subject
Range
gi|116310232 - gi|116310232|emb|CAH67241.1| OSIGBa0140O07.9 [Oryza sativa (indica cultivar-group)]
gi|50924582, gi|... - gi|50924582|ref|XP_472650.1| OSJNBa0027P08.15 [Oryza sativa (japonica cultivar-group)], gi|38344547|...
127.0 [0..1] [129..1]

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Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSWAGPDEI FLSTSLAGFL DKKLIVLLRD GRKLLGTLCS FDQFANVVLQ GACERVIVGE  60
   61 LYCDVPLGLY VIRGENVVLI GELDREKDEL PAHMTCVSEA EIRKAEKAER EARDLKGSMR 120
  121 KRMEFLDFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 1b34A
Description: D1 core SNRNP protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle