YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|215704672, gi...
Organism:	Oryza sativa Japonica Group
Length:	1060 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215704672, gi....

Description	E-value	Query Range	Subject Range
gi\|125572616, gi... - gi\|34908236\|ref\|NP_915465.1\| putative pumilio/Mpt5 family RNA-binding protein [Oryza sativa (japonic...	626.0	[0..13]	[1052..1]
gi\|87241276 - gi\|87241276\|gb\|ABD33134.1\| Nucleic acid binding NABP [Medicago truncatula]	547.0	[0..9]	[1052..1]
gi\|24159015, gi\|... - gi\|24159016\|pdb\|1M8Y\|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio1...	532.0	[0..705]	[1044..1]
PUM4_ARATH - Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2	526.0	[0..1]	[1052..1]
gi\|109102137, gi... - gi\|109102137\|ref\|XP_001095963.1\| PREDICTED: similar to pumilio homolog 2 isoform 4 [Macaca mulatta],...	515.0	[0..26]	[1044..52]
gi\|114576341, gi... - gi\|114576341\|ref\|XP_001140758.1\| PREDICTED: pumilio homolog 2 isoform 11 [Pan troglodytes], gi\|11457...	514.0	[0..26]	[1044..52]

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Predicted Domain #1

Region A:
Residues: [1-681]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISASAVAMR GEMGGGGGGG DEGELEDELD ALLGTGGAGA RRRGEDAGER ERELNMFRSG  60
   61 SAPPTIEGSL NAISGLLRGG GEAAVTVAAI PDAETLNGHG GLLSEDELRA DPAYLSYYYS 120
  121 HGNLNPRLPP PVLSKEDWRS TQRLKAGVVG GIGDGRKVSP EETGHEPTVG RPVFSQNVGF 180
  181 DQEEAARNDV GGAAEWVDGG GDGLIGLSLG RQRSFADILQ DNIGRRTPAS EHPSRAVSRN 240
  241 SFLDNQELLN SADSQYSMHN DILEAQRAVG NVQNVSGLPS INASASQTFA SVLGSSISRN 300
  301 ATPDSHYVPR VPSPGLPPVG VRINSNEKKL NCSSSFNTAS SKAVEPDDIL AAISNMNMSK 360
  361 DGTLGDSNSI SQSKFQSEIS DHQNISLDPK ALQVNKNQHS LMLEADTDYL GIPPISQPSN 420
  421 PSFSDINKNV SGLANIRNST NTRIDGHAEM QRSSTLSTRS YQKSPTSSNA SPGGSPAQHQ 480
  481 NIDNINSAFL NYGLGGYPLS PGLPSMMMNC MGSGNMPPLF ESAAAASAIA SFGADSRNLG 540
  541 NNILSSPTLS LSDVHNLGRT GNQTATGLLS PLSDPFYVQY LKATQYAAQG TANCSDPSLE 600
  601 RGFMGSQYGD LTAVQKAYIE ALLQQQKQYG MPLGKSTTSN HGYYGNLAFG MGMAYPGSPL 660
  661 GSPVASPSGP GSPLRLSERN M

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	1y0fA
Description:	No description for 1y0fA was found.

Predicted Domain #2

Region A:
Residues: [682-1060]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFPSNLRNLG GWNSDPSGYM NDNFPSSLLD EFKSNKARSF ELAEIASHVV EFSADQYGSR  60
   61 FIQQKLETAT VEEKDMVFKE IMPQALSLMT DVFGNYVVQK FFEHGSAAQR RELADQLFGH 120
  121 VLALSLQMYG CRVIQKAIEV VDLDQKTKMV TELDGHIMRC VRDQNGNHVI QKCIECVPED 180
  181 SIQFIISTFY GQVVPLSTHP YGCRVIQRVL EHCTDPKTQE IVMDEILQSV CMLAQDQYGN 240
  241 YVVQHVLEHG KPHERSVIIE KLAGQIIQMS QQKFASNVVE KCLTFGGPAE REVLINEMLG 300
  301 TTDENEPLQA MMKDQFGNYV VQKVLETCDD QQRELILSRV KVHLSALKKY TYGKHIVARV 360
  361 EKLVAAGERR IGLQAQYPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	151.0
Match:	1ib2A
Description:	Pumilio 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits