YRC Public Data Repository - Protein Structure Prediction

Protein:	C20orf11
Organism:	Homo sapiens
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C20orf11.

Description	E-value	Query Range	Subject Range
gi\|47229162 - gi\|47229162\|emb\|CAG03914.1\| unnamed protein product [Tetraodon nigroviridis]	9.0E-52	[1..228]	[2..229]
GID8_BOVIN - Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1	5.0E-51	[1..228]	[1..228]
gi\|73992430 - gi\|73992430\|ref\|XP_545179.2\| PREDICTED: similar to BWK-1 isoform 1 [Canis familiaris]	6.0E-51	[1..228]	[1..228]
gi\|55832256 - gi\|55832256\|gb\|AAV65331.1\| pg4 [Hordeum vulgare]	7.0E-51	[1..227]	[1..224]
gi\|38454224, gi\|... - gi\|38454224\|ref\|NP_942038.1\| Bwk1 leukemia-related [Rattus norvegicus], gi\|37359376\|gb\|AAO18337.1\| B... GID8_MOUSE - Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=1 SV=1	9.0E-51	[1..228]	[1..228]
GID8_CHICK - Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1	1.0E-50	[1..228]	[1..228]
gi\|50604085, gi\|... - gi\|50604085\|gb\|AAH77481.1\| MGC82520 protein [Xenopus laevis], gi\|147898815\|ref\|NP_001090234.1\| hypot... jgi\|Xentr4\|29617... - null	3.0E-50	[1..228]	[1..228]
gi\|21594655 - gi\|21594655\|gb\|AAH32120.1\| Chromosome 20 open reading frame 11 [Homo sapiens]	3.0E-50	[1..228]	[1..228]
GID8_DANRE - Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1	4.0E-50	[1..228]	[1..228]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYAEKPDEI TKDEWMEKLN NLHVQRADMN RLIMNYLVTE GFKEAAEKFR MESGIEPSVD  60
   61 LETLDERIKI REMILKGQIQ EAIALINSLH PELLDTNRYL YFHLQQQHLI ELIRQRETEA 120
  121 ALEFAQTQLA EQGEESRECL TEMERTLALL AFDSPEESPF GDLLHTMQRQ KVWSEVNQAV 180
  181 LDYENRESTP KLAKLLKLLL WAQNELDQKK VKYPKMTDLS KGVIEEPK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2rekA
Description:	No description for 2rekA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits