| Protein: | gi|21039411, gi|... |
| Organism: | Homo sapiens |
| Length: | 1210 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21039411, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1210] | [54..1263] |
|
|
0.0 | [1..1210] | [1..1207] |
|
|
0.0 | [1..1210] | [28..1237] |
|
|
3.0E-97 | [1..1210] | [1..1205] |
|
|
4.0E-89 | [1..1210] | [1..1249] |
|
Region A: Residues: [1-196] |
1 11 21 31 41 51
| | | | | |
1 MEEHSYIQKE LDLQNGSLEE DSVVHSVEND SQNMMESLSP KKYSSSLRFK ANGDYSGSYL 60
61 TLSQPVPAKR SPSPLGTSVR SSPSLAKIQG SKQFSYDGTD KNIPMKPPTP LLNTTSSLSG 120
121 YPLGRADFDH YTGRDSERAL RLSEKPPYSK YSSRHKSHDN VYSLGGLEGR KASGSLLAMW 180
181 NGSSLSDAGP PPISRS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [197-291] |
1 11 21 31 41 51
| | | | | |
1 GAASMPSSPK QARKMSIQDS LALQPKLTRH KELASENINL RTRKYSSSSL SHMGAYSRSL 60
61 PRLYRATENQ LTPLSLPPRN SLGNSKRTKL GEKDL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [292-463] |
1 11 21 31 41 51
| | | | | |
1 PHSVIDNDNY LNFSSLSSGA LPYKTSASEG NPYVSSTLSV PASPRVARKM LLASTSSCAS 60
61 DDFDQASYVG TNPSHSLLAG ESDRVFATRR NFSCGSVEFD EADLESLRQA SGTPQPALRE 120
121 RKSSISSISG RDDLMDYHRR QREERLREQE MERLERQRLE TILSLCAEYT KP
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [464-845] |
1 11 21 31 41 51
| | | | | |
1 DSRLSTGTTV EDVQKINKEL EKLQLSDEES VFEEALMSPD TRYRCHRKDS LPDADLASCG 60
61 SLSQSSASFF TPRSTRNDEL LSDLTRTPPP PSSTFPKASS ESSYLSILPK TPEGISEEQR 120
121 SQELAAMEET RIVILNNLEE LKQKIKDIND QMDESFRELD MECALLDGEQ KSETTELMKE 180
181 KEILDHLNRK IAELEKNIVG EKTKDADLLD VESKHFEDLE FQQLEHESRL DEEKENLTQQ 240
241 LLREVAEYQR NIVSRKEKIS ALKKQANHIV QQAQREQDHF VKEKNNLIMM LQREKENLCN 300
301 LEKKYSSLSG GKGFPVNPNT LKEGYISVNE INEPCGNSTN LSPSTQFPAD ADAVATEPAT 360
361 AVLASQPQSK EHFRSLEERK KQ
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [846-1100] |
1 11 21 31 41 51
| | | | | |
1 HKEGLYLSDT LPRKKTTSSI SPHFSSATMG RSITPKAHLP LGQSNSCGSV LPPSLAAMAK 60
61 DSESRRMLRG YNHQQMSEGH RQKSEFYNRT ASESNVYLNS FHYPDHSYKD QAFDTLSLDS 120
121 SDSMETSISA CSPDNISSAS TSNIARIEEM ERLLKQAHAE KTRLLESRER EMEAKKRALE 180
181 EEKRRREILE KRLQEETSQR QKLIEKEVKI RERQRAQARP LTRYLPVRKE DFDLRSHVET 240
241 AGHNIDTCYH VSITE
|
| Detection Method: | |
| Confidence: | 1.09 |
| Match: | 1miuA |
| Description: | BRCA2 helical domain; BRCA2 tower domain; OB-fold domains of BRCA2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1101-1210] |
1 11 21 31 41 51
| | | | | |
1 KTCRGFLIKM GGKIKTWKKR WFVFDRNKRT FSYYADKHET KLKGVIYFQA IEEVYYDHLK 60
61 NANKSPNPLL TFSVKTHDRI YYMVAPSPEA MRIWMDVIVT GAEGYTHFLL
|
| Detection Method: | |
| Confidence: | 20.0 |
| Match: | 1v5uA |
| Description: | Solution Structure of the C-terminal Pleckstrin Homology Domain of Sbf1 from Mouse |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.597587183571285 | bayes_pls_golite062009 |
| protein binding | 0.29116370406325 | bayes_pls_golite062009 |
