YRC Public Data Repository - Protein Structure Prediction

Protein:	CHMP4B
Organism:	Homo sapiens
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHMP4B.

Description	E-value	Query Range	Subject Range
gi\|50731660 - gi\|50731660\|ref\|XP_418312.1\| PREDICTED: similar to Snf7 homologue associated with Alix 3 [Gallus gal...	7.0E-48	[1..221]	[234..452]
gi\|74001062 - gi\|74001062\|ref\|XP_544799.2\| PREDICTED: similar to chromatin modifying protein 2B [Canis familiaris]	2.0E-46	[3..220]	[580..790]
gi\|114620768 - gi\|114620768\|ref\|XP_528179.2\| PREDICTED: similar to Chromatin modifying protein 4C [Pan troglodytes]	2.0E-42	[1..221]	[114..345]
gi\|109471140 - gi\|109471140\|ref\|XP_001065258.1\| PREDICTED: similar to Charged multivesicular body protein 4b (Chrom...	1.0E-40	[1..211]	[1..211]
CE06928 - WBGene00016497 status:Predicted TR:Q22916 protein_id:AAC25860.1	1.0E-35	[1..222]	[49..265]
IPI:IPI00214716.... - Ensembl_locations(Chr-bp):3-137838195 CHM4B_MOUSE - Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=1 SV=2	3.0E-35	[1..224]	[1..224]
gi\|109092293 - gi\|109092293\|ref\|XP_001105255.1\| PREDICTED: similar to Charged multivesicular body protein 4b (Chrom...	4.0E-35	[1..224]	[1..224]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFGKLFGA GGGKAGKGGP TPQEAIQRLR DTEEMLSKKQ EFLEKKIEQE LTAAKKHGTK  60
   61 NKRAALQALK RKKRYEKQLA QIDGTLSTIE FQREALENAN TNTEVLKNMG YAAKAMKAAH 120
  121 DNMDIDKVDE LMQDIADQQE LAEEISTAIS KPVGFGEEFD EDELMAELEE LEQEELDKNL 180
  181 LEISGPETVP LPNVPSIALP SKPAKKKEEE DDDMKELENW AGSM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.154902
Match:	2gd5A
Description:	No description for 2gd5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits