YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUFS5
Organism:	Homo sapiens
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUFS5.

Description	E-value	Query Range	Subject Range
gi\|73976897 - gi\|73976897\|ref\|XP_532550.2\| PREDICTED: similar to NADH-ubiquinone oxidoreductase 15 kDa subunit (Co...	177.0	[0..1]	[106..125]
gi\|109090224 - gi\|109090224\|ref\|XP_001106653.1\| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (N...	176.0	[0..1]	[106..1]
NDUS5_GORGO - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Gorilla gorilla gorilla GN=NDUFS5 PE=3 SV=3 gi\|111661859 - gi\|111661859\|gb\|ABH12170.1\| mitochondrial complex I subunit NDUFS5 [Gorilla gorilla]	176.0	[0..1]	[106..1]
NDUS5_MACFA - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Macaca fascicularis GN=NDUFS5 PE=3 SV=3	176.0	[0..1]	[106..1]
gi\|207080042 - gi\|207080042\|ref\|NP_001128791.1\| DKFZP468J0613 protein [Pongo abelii] gi\|55728334 - gi\|55728334\|emb\|CAH90911.1\| hypothetical protein [Pongo abelii]	173.0	[0..1]	[106..1]
gi\|114668408 - gi\|114668408\|ref\|XP_511369.2\| PREDICTED: hypothetical protein [Pan troglodytes]	172.0	[0..1]	[106..1]
NDUS5_BOVIN - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Bos taurus GN=NDUFS5 PE=1 SV=2	169.0	[0..1]	[105..1]
gi\|27693507, gi\|... - gi\|72086149\|ref\|NP_001025223.1\| NADH dehydrogenase (ubiquinone) Fe-S protein 5b [Rattus norvegicus],...	167.0	[0..1]	[106..1]

Back

Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFLDIQKRF GLNIDRWLTI QSGEQPYKMA GRCHAFEKEW IECAHGIGYT RAEKECKIEY  60
   61 DDFVECLLRQ KTMRRAGTIR KQRDKLIKEG KYTPPPHHIG KGEPRP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.545	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.544	a.29.14	Description not found.
View	Download	0.533	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View	Download	0.523	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View	Download	0.499	a.8.3	Families 57/38 glycoside transferase middle domain
View	Download	0.428	a.7.16	Description not found.
View	Download	0.369	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.358	a.74.1	Cyclin-like
View	Download	0.311	a.24.3	Cytochromes
View	Download	0.308	a.133.1	Phospholipase A2, PLA2

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits