YRC Public Data Repository - Protein Structure Prediction

Protein:	PANE_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	350 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PANE_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|238856808, gi... - gi\|238856808\|ref\|ZP_04647068.1\| glycerol-3-phosphate dehydrogenase [Enterococcus faecalis TUSoD Ef11... gi\|229305101, gi... - gi\|229549832\|ref\|ZP_04438557.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f... GPDA_ENTFA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN... gi\|227073624, gi... - gi\|227518935\|ref\|ZP_03948984.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f... GPDA_ENTFA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Enterococcus faecalis GN=gpsA PE=3 SV=1 gi\|229309209, gi... - gi\|229545641\|ref\|ZP_04434366.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f... gi\|227553554, gi... - gi\|227553554\|ref\|ZP_03983603.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f...	218.0	[0..1]	[349..1]
GPDA_LACRJ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Lactobacillus reuteri (strain JCM 1112) GN=gpsA PE=3... gi\|227530716, gi... - gi\|227530716\|ref\|ZP_03960765.1\| glycerol-3-phosphate dehydrogenase (NAD(P)(+)) [Lactobacillus reuter... gi\|184153015, gi... - gi\|89090998\|ref\|ZP_01164028.1\| Glycerol-3-phosphate dehydrogenase (NAD(P)+) [Lactobacillus reuteri J... GPDA_LACRD - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Lactobacillus reuteri (strain DSM 20016) GN=gpsA PE=... gi\|227071530, gi... - gi\|227363430\|ref\|ZP_03847554.1\| glycerol-3-phosphate dehydrogenase (NAD(P)(+)) [Lactobacillus reuter...	215.0	[0..1]	[348..1]
gi\|194453008, gi... - gi\|92088589\|ref\|ZP_01273550.1\| Glycerol-3-phosphate dehydrogenase (NAD(P)+) [Lactobacillus reuteri 1...	215.0	[0..1]	[348..1]
gi\|221319444 - gi\|221319444\|ref\|ZP_03600738.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Bacillus subti... gi\|221314522 - gi\|221314522\|ref\|ZP_03596327.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Bacillus subti... GPDA_BACSU - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus subtilis (strain 168) GN=gpsA PE=3 SV=2 gi\|221323720 - gi\|221323720\|ref\|ZP_03605014.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Bacillus subti... GPDA_BACSU - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus subtilis GN=gpsA PE=3 SV=2	212.0	[0..3]	[343..2]
gi\|48823891 - ref\|ZP_00285354.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Enterococcus faecium] gi\|69249418, gi\|... - gi\|69249418\|ref\|ZP_00604967.1\| Glycerol-3-phosphate dehydrogenase (NAD(P)+) [Enterococcus faecium DO...	210.0	[0..1]	[349..1]
GPDA_LACBA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN...	210.0	[0..1]	[347..1]
gi\|974332 - gi\|974332\|gb\|AAA86746.1\| NAD(P)H-dependent dihydroxyacetone-phosphate reductase gi\|974332\|gb\|AAA... - NAD(P)H-dependent dihydroxyacetone-phosphate reductase	209.0	[0..3]	[343..2]
GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae...	209.0	[0..3]	[341..1]
GPDA_GEOSL - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12... GPDA_GEOSL - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Geobacter sulfurreducens GN=gpsA PE=3 SV=1	209.0	[0..1]	[338..1]
GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans GN=gpsA PE=3 SV=1	208.0	[0..3]	[341..1]

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Predicted Domain #1

Region A:
Residues: [1-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNTIYILGA GSIGSLLAYE LASLKSINNR VILLLRDKSR VNSFKDKNST LKIDRLFEEN  60
   61 VPHLCCQVTA SEPSQLNVQS IENMIVTTKA GQTENALSKY LPYLSKNSNI LFVQNGMGAV 120
  121 ENVCGKLWPE EQNKPSIYQG VISHGCFQTA PFHFSHAGLG DLKISKVPKN PKKILPDEAA 180
  181 ETPCEMIKSL GKSELLRLRY MNYPELLVNQ CEKLVINACI NPTTATLDCV NGELYNDESA 240
  241 KELFRCIIKE CVDIFFKCIP LFKNNEEAEK ILNVNRLLDR VMFVGTKVNG ANSSSTRQDC 300
  301 LLLRETEIDA INGYVVKLAE NNGFQATVNK TMMLLTKSRL GLNRCRAHAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.045757
Match:	1x0vA
Description:	No description for 1x0vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits