YRC Public Data Repository - Protein Structure Prediction

Protein:	UFD2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	1010 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UFD2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|49094236, gi\|... - gi\|67528488\|ref\|XP_662046.1\| hypothetical protein AN4442.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	1114.0	[0..1]	[1006..1]
gi\|11282501, gi\|... - gi\|3930517\|gb\|AAC80427.1\| ubiquitin fusion degradation protein-2 [Schizosaccharomyces pombe], gi\|112...	1061.0	[0..86]	[1010..7]
gi\|21622382 - gi\|21622382\|emb\|CAD37036.1\| related to ubiquitin fusion degradation protein 2 [Neurospora crassa]	1050.0	[0..4]	[1006..20]
gi\|46109372, gi\|... - gi\|46109372\|ref\|XP_381744.1\| hypothetical protein FG01568.1 [Gibberella zeae PH-1], gi\|42545680\|gb\|E...	1048.0	[0..7]	[1006..546]
gi\|145015748, gi... - gi\|39942350\|ref\|XP_360712.1\| hypothetical protein MGG_03255 [Magnaporthe grisea 70-15], gb\|EAA51660....	1035.0	[0..4]	[1006..15]
gi\|32404004, gi\|... - gi\|32404004\|ref\|XP_322615.1\| hypothetical protein [Neurospora crassa], gi\|28917531\|gb\|EAA27230.1\| co... gi\|85080009 - gi\|85080009\|ref\|XP_956466.1\| hypothetical protein NCU03357 [Neurospora crassa OR74A]	1019.0	[0..4]	[1006..20]
gi\|62650035 - gi\|62650035\|ref\|XP_233679.3\| PREDICTED: similar to Ubiquitin conjugation factor E4 B (Ubiquitin-fusi...	998.0	[0..49]	[1004..220]
gi\|115398121, gi... - gi\|115398121\|ref\|XP_001214652.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	997.0	[0..1]	[1001..5]
UBE4B_MOUSE, UB4... - Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=2, (Q9ES00) Ubiquitin conjugation...	996.0	[0..49]	[1004..220]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLEKIRLK RLAKLQQTNS EANSSKEPKE SNIAPEPKKP DLKKRFIGSK ATTSNSEQKE  60
   61 ISPPVTSGAP KHRLF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [76-1010]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKDEWMHFIT CQALNITLSE TDSSKYYLEG FKKDLEEEGS PLLFNENNVD SALLSRLSTT  60
   61 GNNTFSYLLQ SWSFLYQYKK RLPKDENQDF KIHYLSLLKS LLVSYAGIVV MLPDTFNSET 120
  121 IDLAEVLIGA EGIPLEFLSE FVQRFEHENL DELFIPVLES LSLKIGLMNV DTVQMNVMQI 180
  181 ILQLVSLKPI ALLLPKLPSW NPTNNAGEIE YKTFLGRISS LSVFTQDVAS RYFSNSTERS 240
  241 AQNISSSISS LKLTMSTYQD VLFQIFNTLI RTSTSLRESV LDFFAMVVNA NHKRQSIQVN 300
  301 HFDITSDACM LNFSHVLSRL SEPFLDIGCS KIDRVQVEYF RRNPRVDIKE ETKLNADQKA 360
  361 SESFYSKPAE GSNNFISDIF FLNLAFHHYG VNATFKALEQ LVQSIRDSEK LKERLETEQQ 420
  421 NMSGSFQATR LTAQLSRLDQ RLDLDRSFVH CYEIMLTQTS DTSRSFSFLN FVAIWLSRLA 480
  481 DGQSSTYPKM PLSLPFNENA PEAFKCLPEY FIETITDYML SLFKTSSSTL TLHSLEPLCE 540
  541 FCVSFLTQAN YIKNPYLRAK LAEILYFGVQ THVGRSELLL DVVRTSKVAT RWLLPALMAF 600
  601 YIEIESTGQS TQFYDKFNIR FYICEVFRTI WKQPAYFGKL EQEQKTNLPF FVKFVALMLN 660
  661 DATYLLDEAL LKLTEIHNLQ SLLADAISNS NSNQNVQESQ SNLAAAERQA STYCQLGNET 720
  721 IFMLKLFTSS IPKAFCAVEI VDRLAAMLNY NLQALCGPKC SNLKVEDPTK YHFNAKTLLS 780
  781 IIFDVYLNLC NEPAFVEAVA HDGRSYSKEI FERATSIMTK HNLKSSFDIE AIKEFVNRVE 840
  841 AFRLQEATEE EDMGDIPDYF LDPLMFTIMK DPVVLPRSGI SIDRSTIKAH LLSDATDPFN 900
  901 RTPLTLDDVT PNDTLREEIN TFLKSKRNKH SRNSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2qizA
Description:	No description for 2qizA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits