YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM16_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM16_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|37543032, gi\|... - gi\|84370368\|ref\|NP_001033685.1\| DnaJ (Hsp40) homolog, subfamily A, member 3 isoform 2 [Rattus norveg...	121.0	[0..4]	[128..37]
DNAJ_BACSU - Chaperone protein dnaJ OS=Bacillus subtilis GN=dnaJ PE=2 SV=2 gi\|2634992, gi\|1... - gi\|2634992\|emb\|CAB14488.1\| heat-shock protein [Bacillus subtilis subsp. subtilis str. 168], gi\|16079...	121.0	[0..55]	[127..1]
gi\|205361114, gi... - gi\|74195545\|dbj\|BAE39586.1\| unnamed protein product [Mus musculus], gi\|205361114\|ref\|NP_001128584.1\|...	120.0	[0..5]	[128..38]
DNAJ_CARHZ - Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901...	120.0	[0..57]	[123..2]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPRAVGRF IIVGSQVMSK AFVQAYKQMI ANAAQQSTGQ AAASKSSTAV RRGEMTIQEA  60
   61 GSILNIKPES LEEGELEKRF QKMFEINDPK KGGSFYLQSK VFRAHEKLKS ELDQKIQEQS 120
  121 PAKPTSSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1bq0A
Description:	J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-104) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.0541759325193	bayes_pls_golite062009
protein binding	1.63230390088325	bayes_pls_golite062009
transporter activity	1.29863098651348	bayes_pls_golite062009
unfolded protein binding	0.91241047562027	bayes_pls_golite062009
substrate-specific transporter activity	0.812144232432417	bayes_pls_golite062009
heat shock protein binding	0.796066295738949	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: