YRC Public Data Repository - Protein Structure Prediction

Protein:	VID27_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	801 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VID27_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|32419835, gi\|... - gi\|32419835\|ref\|XP_330361.1\| hypothetical protein [Neurospora crassa], gi\|28920343\|gb\|EAA29714.1\| co... gi\|85091537 - gi\|85091537\|ref\|XP_958950.1\| hypothetical protein NCU09711 [Neurospora crassa OR74A]	1049.0	[0..1]	[801..1]
gi\|40744400, gi\|... - gi\|67525095\|ref\|XP_660609.1\| hypothetical protein AN3005.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	1047.0	[0..1]	[801..1]
gi\|42551068, gi\|... - gi\|46123349\|ref\|XP_386228.1\| hypothetical protein FG06052.1 [Gibberella zeae PH-1], gi\|42551068\|gb\|E...	1045.0	[0..1]	[801..1]
gi\|145014547, gi... - gi\|39943696\|ref\|XP_361385.1\| hypothetical protein MGG_03859 [Magnaporthe grisea 70-15], gb\|EAA50100....	1037.0	[0..1]	[801..12]
gi\|66852378, gi\|... - gi\|71000048\|ref\|XP_754741.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668523...	1024.0	[0..1]	[801..75]
gi\|83766175 - gi\|83766175\|dbj\|BAE56318.1\| unnamed protein product [Aspergillus oryzae] gi\|169767698 - gi\|169767698\|ref\|XP_001818320.1\| hypothetical protein [Aspergillus oryzae RIB40]	1019.0	[0..1]	[801..1]
gi\|115384826, gi... - gi\|115384826\|ref\|XP_001208960.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	1005.0	[0..7]	[801..463]
gi\|119177540, gi... - gi\|90299317\|gb\|EAS28948.1\| hypothetical protein CIMG_07694 [Coccidioides immitis RS], gi\|119177540\|r...	1000.0	[0..1]	[801..1]
gi\|88176071, gi\|... - gi\|88176071\|gb\|EAQ83539.1\| hypothetical protein CHGG_09943 [Chaetomium globosum CBS 148.51], gi\|1162...	984.0	[0..1]	[797..1]
gi\|71005606, gi\|... - gi\|71005606\|ref\|XP_757469.1\| hypothetical protein UM01322.1 [Ustilago maydis 521], ref\|XP_398937.1\| ...	930.0	[0..1]	[784..1]

Back

Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFMLKSLGKY IWGNTNSTEI VQIPYGQLYS VHENYRECMF KDASASIRRT TAEFQYQLVI  60
   61 QRAYEEGEEE LEDDGDEAED EQSFLLDEKL HLRFDVNKDS ITIMWDNPDF QDGTLYEFTC 120
  121 ENCLQEGVAY TFEMVALQCM YERKYRQSHE KATLADLEQF SNPITRPSKE VDSLENIVTK 180
  181 LDLESEDLMR LKKQEQLDDE IAKKYLLGQQ EAEEPLVQQQ TSIVNPEKEE VT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [233-801]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTENIKSLEG ELMGTISAEL HLFDAVEEVF ILQDPNVEAS VFDLGDWNYW FTISTEEKTW  60
   61 LSQSVDADMN PVFSFEHLSF IWNYFDANSN AFSWLLRFDS QVRMEQFQEL LMRALWESLN 120
  121 QQRWLKIDDE QRDYVMETFH EDEELEDSED EEFARQQLLS RKEEEEEEDE EASDFEDSFA 180
  181 DFSDGEADDL DESRWRKEAA KEHNSLLAVG YKNDRSYVVR NNKIGVFKHV DEKGLKFQTA 240
  241 LNNLSTPKGK SLRPSKLMLH NQDSSILFQT ENAPHSLYHM DIEYGKIVDE WKVHDDVPLV 300
  301 TFTPDNKFAQ MTAEQTLIGL SNNSIFRIDP RVEGNKLVAE QFKQYATKND FSSAATTENG 360
  361 YIAVASNKGD IRLFDRIGVN AKTALPALGE AIIGVDVTAS GDFVLATCKT YILLIDTRIK 420
  421 EGRYAGRLGF ERNFAKDKKP KPKRLQLSPQ HIAMMQRELK GGASFTPAKF NTGIDAKETT 480
  481 IVSSIGPFLI SWNLDRVKRG FTDSYKIRRY DANVQAEDFR FGTDRSLIVA LPDDVAMVDK 540
  541 SSLRRPTRES ICTPVKKLRS KHDIVNAPY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.89
Match:	1nr0A
Description:	Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.82996882191214	bayes_pls_golite062009
protein binding	0.892674910136367	bayes_pls_golite062009
transporter activity	0.508560035300103	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: