YRC Public Data Repository - Protein Structure Prediction

Protein:	LAC1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	384 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LAC1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|85082845 - gi\|85082845\|ref\|XP_956995.1\| hypothetical protein NCU00008 [Neurospora crassa OR74A] gi\|28918078, gi\|... - gi\|32402962\|ref\|XP_322094.1\| hypothetical protein [Neurospora crassa], gi\|28918078\|gb\|EAA27759.1\| hy...	393.0	[0..4]	[375..28]
gi\|42551812, gi\|... - gi\|46122295\|ref\|XP_385701.1\| hypothetical protein FG05525.1 [Gibberella zeae PH-1], gi\|42551812\|gb\|E...	383.0	[0..1]	[366..39]
gi\|39940102, gi\|... - gi\|39940102\|ref\|XP_359588.1\| hypothetical protein MGG_05189 [Magnaporthe grisea 70-15], gb\|EAA52497....	382.0	[0..3]	[378..27]
LAG1_YEAST - Sphingosine N-acyltransferase LAG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAG1 ... LAG1 - Ceramide synthase component, involved in synthesis of ceramide from C26(acyl)-coenzyme A and dihydro...	381.0	[0..3]	[382..15]
gi\|49527656 - gi\|49527656\|emb\|CAG61305.1\| unnamed protein product [Candida glabrata] gi\|49527656, gi\|... - gi\|50291823\|ref\|XP_448344.1\| unnamed protein product [Candida glabrata], gi\|49527656\|emb\|CAG61305.1\|...	368.0	[0..5]	[374..24]
gi\|7491658 - gi\|7491658\|pir\|\|T40389 longevity assurance protein homolog SPBC3E7.15c - fission yeast (Schizosaccha...	368.0	[0..28]	[362..1]
gi\|88183613, gi\|... - gi\|88183613\|gb\|EAQ91081.1\| hypothetical protein CHGG_03016 [Chaetomium globosum CBS 148.51], gi\|1162...	365.0	[0..2]	[380..26]
gi\|90298550, gi\|... - gi\|90298550\|gb\|EAS28181.1\| hypothetical protein CIMG_09385 [Coccidioides immitis RS], gi\|119174875\|r...	360.0	[0..19]	[367..14]
gi\|44980896, gi\|... - gi\|45185238\|ref\|NP_982955.1\| ABR009Wp [Ashbya gossypii ATCC 10895], gi\|44980896\|gb\|AAS50779.1\| ABR00... gi\|44980896 - gi\|44980896\|gb\|AAS50779.1\| ABR009Wp [Ashbya gossypii ATCC 10895]	356.0	[0..4]	[365..11]
gi\|66848567, gi\|... - gi\|70992171\|ref\|XP_750934.1\| ceramide synthase membrane component (LAG1) [Aspergillus fumigatus Af29...	353.0	[0..6]	[368..3]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNNTSRRSQ SQKFKNIPSI SAGSFSTMPV QHRGRRRRSK SIVGRAAQNA VLRSKEKTWI  60
   61 VPLILLTLLV GWYFVNPNGY IKYGIFLSYP IPGTNPAQYG KGRLDIAFCL FYALFFTFCR 120
  121 EFIMQEIIAR IGRHFNIRAP AKLRRFEEQA YTCLYFTVMG SWGLYVMKQT PMWFFNTDAF 180
  181 WEEY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.823909
Match:	PF08390.2
Description:	No description for PF08390.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [185-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHFYHVGSFK AFYLIEAAYW IQQALVLILQ LEKPRKDFKE LVVHHIITLL LIGLSYYFHF  60
   61 TWIGLAVFIT MDTSDIWLAL SKCLNYVNTV IVYPIFVIFV FVWIYMRHYL NFKIMWAVWG 120
  121 TMRTINSFDL DWAAEQYKCW ISRDVTLILL TALQLVNIYW LILILRIGYR AFTTNDTHDE 180
  181 RSEDEDEEVS DEKSSAKKND

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits