YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SURF1
Organism: Homo sapiens
Length: 300 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SURF1.

Description E-value Query
Range
Subject
Range
gi|33086478 - gi|33086478|gb|AAP92551.1| Ab1-205 [Rattus norvegicus]
0.0 [1..300] [428..733]
gi|12832475 - gi|12832475|dbj|BAB22123.1| unnamed protein product [Mus musculus]
0.0 [1..298] [1..304]
SURF1_CHICK - Surfeit locus protein 1 OS=Gallus gallus GN=SURF1 PE=3 SV=1
1.0E-89 [15..298] [25..308]
gi|55958185 - gi|55958185|emb|CAI12836.1| surfeit 1 [Homo sapiens]
8.0E-88 [19..300] [1..270]
SURF1_TAKRU - Surfeit locus protein 1 (Fragment) OS=Takifugu rubripes GN=surf1 PE=3 SV=1
5.0E-82 [60..297] [1..238]

Back

Predicted Domain #1
Region A:
Residues: [1-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVAALQLG LRAAGLGRAP ASAAWRSVLR VSPRPGVAWR PSRCGSSAAE ASATKAEDDS  60
   61 FLQWVLLLIP VTAFGLGTWQ VQRRKWKLNL IAELESRVLA EPVPLPADPM ELKNLEYRPV 120
  121 KVRGCFDHSK ELYMMPRTMV DPVREAREGG LISSSTQSGA YVVTPFHCTD LGVTILVNRG 180
  181 FVPRKKVNPE TRQKGQIEGE VDLIGMVRLT ETRQPFVPEN NPERNHWHYR DLEAMARITG 240
  241 AEPIFIDANF QSTVPGGPIG GQTRVTLRNE HLQYIVTWYG LSAATSYLWF KKFLRGTPGV 300
  301 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle