YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23397492, gi\|...
Organism:	Homo sapiens
Length:	364 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23397492, gi|....

Description	E-value	Query Range	Subject Range
TMEM20 - transmembrane protein 20	7.0E-40	[1..364]	[1..365]
gi\|114631860 - gi\|114631860\|ref\|XP_521566.2\| PREDICTED: transmembrane protein 20 [Pan troglodytes]	8.0E-40	[1..364]	[1..365]
gi\|62642238 - gi\|62642238\|ref\|XP_220029.2\| PREDICTED: similar to transmembrane protein 20 [Rattus norvegicus]	1.0E-39	[6..363]	[11..367]
gi\|60468186 - gi\|60468186\|gb\|EAL66196.1\| hypothetical protein DDB0204910 [Dictyostelium discoideum] gi\|66812030, gi\|... - gi\|66812030\|ref\|XP_640194.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60468186\|gb\|EAL...	1.0E-39	[65..358]	[212..510]
S35G1_MOUSE - Solute carrier family 35 member G1 OS=Mus musculus GN=Slc35g1 PE=2 SV=1	1.0E-36	[13..364]	[18..368]
gi\|109089992 - gi\|109089992\|ref\|XP_001093499.1\| PREDICTED: similar to transmembrane protein 20 [Macaca mulatta]	4.0E-36	[1..364]	[1..363]
gi\|73998339 - gi\|73998339\|ref\|XP_543936.2\| PREDICTED: similar to transmembrane protein 20 [Canis familiaris]	2.0E-33	[59..359]	[143..445]
gi\|85110407 - gi\|85110407\|ref\|XP_963444.1\| hypothetical protein NCU05453 [Neurospora crassa OR74A] gi\|32409655, gi\|... - gi\|32409655\|ref\|XP_325308.1\| related to SLY41 protein [MIPS] [Neurospora crassa], gi\|28925125\|gb\|EAA...	1.0E-32	[3..363]	[62..466]
gi\|28203124, gi\|... - gi\|28210686\|ref\|NP_781630.1\| membrane spanning protein [Clostridium tetani E88], gi\|28203124\|gb\|AAO3...	2.0E-32	[69..359]	[6..290]

Back

Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPQDSTGVA ELQEPGLPLT DDAPPGATEE PAAAEAAGAP DRGRCWLCLS SPCCSRTEPA  60
   61 KKKAPCPGLG LFYTLLSAFL FSVGSLFVKK VQDVHAVEIS AFRC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [105-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VFQMLVVIPC LIYRKTGFIG PKGQRIFLIL RGVLGSTAMM LIYYAYQTMS LADATVITFS  60
   61 SPVFTSIFAW ICLKEKYSPW DALFTVFTIT GVILIVRPPF LFGS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.18
Match:	2i68A
Description:	No description for 2i68A was found.

Predicted Domain #3

Region A:
Residues: [209-364]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTSGMEESYS GHLKGTFAAI GSAVFAASTL VILRKMGKSV DYFLSIWYYV VLGLVESVII  60
   61 LSVLGEWSLP YCGLDRLFLI FIGLFGLGGQ IFITKALQIE KAGPVAIMKT MDVVFAFIFQ 120
  121 IIFFNNVPTW WTVGGALCVV ASNVGAAIRK WYQSSK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits