YRC Public Data Repository - Protein Structure Prediction

Protein:	AK3
Organism:	Homo sapiens
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AK3.

Description	E-value	Query Range	Subject Range
gi\|73965331 - gi\|73965331\|ref\|XP_853049.1\| PREDICTED: similar to adenylate kinase 3 [Canis familiaris]	8.0E-56	[1..227]	[1..227]
gi\|12837588 - gi\|12837588\|dbj\|BAB23876.1\| unnamed protein product [Mus musculus]	1.0E-55	[1..227]	[1..227]
KAD3_PONAB - GTP:AMP phosphotransferase AK3, mitochondrial OS=Pongo abelii GN=AK3 PE=2 SV=3 KAD3_PONPY - GTP:AMP phosphotransferase mitochondrial - Pongo pygmaeus (Orangutan)	2.0E-55	[1..227]	[1..227]
gi\|109111647 - gi\|109111647\|ref\|XP_001084982.1\| PREDICTED: similar to adenylate kinase 3 isoform 2 [Macaca mulatta] gi\|90075362 - gi\|90075362\|dbj\|BAE87361.1\| unnamed protein product [Macaca fascicularis]	3.0E-55	[1..227]	[1..227]
KAD3_BOVIN - GTP:AMP phosphotransferase AK3, mitochondrial OS=Bos taurus GN=AK3 PE=1 SV=3	4.0E-55	[1..227]	[1..227]
gi\|33303821 - gi\|33303821\|gb\|AAQ02424.1\| adenylate kinase 3 like 1 [synthetic construct]	6.0E-55	[1..227]	[1..227]
gi\|114623658 - gi\|114623658\|ref\|XP_001138039.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]	1.0E-54	[1..227]	[1..227]
gi\|6518533 - gi\|6518533\|dbj\|BAA87913.1\| adenylate kinase 3 alpha [Homo sapiens]	2.0E-54	[1..227]	[1..227]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGASARLLRA VIMGAPGSGK GTVSSRITTH FELKHLSSGD LLRDNMLRGT EIGVLAKAFI  60
   61 DQGKLIPDDV MTRLALHELK NLTQYSWLLD GFPRTLPQAE ALDRAYQIDT VINLNVPFEV 120
  121 IKQRLTARWI HPASGRVYNI EFNPPKTVGI DDLTGEPLIQ REDDKPETVI KRLKAYEDQT 180
  181 KPVLEYYQKK GVLETFSGTE TNKIWPYVYA FLQTKVPQRS QKASVTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.39794
Match:	1zd8A
Description:	Structure of human adenylate kinase 3 like 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits