YRC Public Data Repository - Protein Structure Prediction

Protein:	SEC23B
Organism:	Homo sapiens
Length:	767 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC23B.

Description	E-value	Query Range	Subject Range
gi\|13365827 - gi\|13365827\|dbj\|BAB39299.1\| hypothetical protein [Macaca fascicularis]	0.0	[1..767]	[1..767]
gi\|63102435 - gi\|63102435\|gb\|AAH95404.1\| Sec23 homolog B (S. cerevisiae) [Homo sapiens]	0.0	[1..767]	[1..767]
gi\|73991096, gi\|... - gi\|73991096\|ref\|XP_857053.1\| PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 10 [Canis...	0.0	[1..767]	[1..767]
gi\|114681138, gi... - gi\|114681144\|ref\|XP_001141143.1\| PREDICTED: Sec23 (S. cerevisiae) homolog B isoform 6 [Pan troglodyt...	0.0	[1..767]	[1..767]
SC23B_PONAB - Protein transport protein Sec23B OS=Pongo abelii GN=SEC23B PE=2 SV=1 SC23B_PONPY - Protein transport protein Sec23B - Pongo pygmaeus (Orangutan)	0.0	[1..767]	[1..766]
SC23B_BOVIN - Protein transport protein Sec23B OS=Bos taurus GN=SEC23B PE=2 SV=1	0.0	[1..767]	[1..767]
gi\|74143077 - gi\|74143077\|dbj\|BAE42552.1\| unnamed protein product [Mus musculus]	0.0	[1..766]	[1..766]

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Predicted Domain #1

Region A:
Residues: [1-767]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATYLEFIQQ NEERDGVRFS WNVWPSSRLE ATRMVVPLAC LLTPLKERPD LPPVQYEPVL  60
   61 CSRPTCKAVL NPLCQVDYRA KLWACNFCFQ RNQFPPAYGG ISEVNQPAEL MPQFSTIEYV 120
  121 IQRGAQSPLI FLYVVDTCLE EDDLQALKES LQMSLSLLPP DALVGLITFG RMVQVHELSC 180
  181 EGISKSYVFR GTKDLTAKQI QDMLGLTKPA MPMQQARPAQ PQEHPFASSR FLQPVHKIDM 240
  241 NLTDLLGELQ RDPWPVTQGK RPLRSTGVAL SIAVGLLEGT FPNTGARIML FTGGPPTQGP 300
  301 GMVVGDELKI PIRSWHDIEK DNARFMKKAT KHYEMLANRT AANGHCIDIY ACALDQTGLL 360
  361 EMKCCANLTG GYMVMGDSFN TSLFKQTFQR IFTKDFNGDF RMAFGATLDV KTSRELKIAG 420
  421 AIGPCVSLNV KGPCVSENEL GVGGTSQWKI CGLDPTSTLG IYFEVVNQHN TPIPQGGRGA 480
  481 IQFVTHYQHS STQRRIRVTT IARNWADVQS QLRHIEAAFD QEAAAVLMAR LGVFRAESEE 540
  541 GPDVLRWLDR QLIRLCQKFG QYNKEDPTSF RLSDSFSLYP QFMFHLRRSP FLQVFNNSPD 600
  601 ESSYYRHHFA RQDLTQSLIM IQPILYSYSF HGPPEPVLLD SSSILADRIL LMDTFFQIVI 660
  661 YLGETIAQWR KAGYQDMPEY ENFKHLLQAP LDDAQEILQA RFPMPRYINT EHGGSQARFL 720
  721 LSKVNPSQTH NNLYAWGQET GAPILTDDVS LQVFMDHLKK LAVSSAC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2nupA
Description:	No description for 2nupA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits