| Protein: | UPF3A |
| Organism: | Homo sapiens |
| Length: | 476 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UPF3A.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-43 | [2..476] | [221..693] |
|
|
4.0E-42 | [2..476] | [513..988] |
|
|
3.0E-41 | [25..475] | [39..516] |
|
|
3.0E-38 | [23..476] | [1352..1812] |
|
|
6.0E-38 | [2..475] | [449..926] |
|
|
8.0E-38 | [7..475] | [231..699] |
|
Region A: Residues: [1-339] |
1 11 21 31 41 51
| | | | | |
1 MRSEKEGAGG LRAAVAARGP SGREKLSALE VQFHRDSQQQ EAETPPTSSS GCGGGAGKPR 60
61 EEKRTALSKV VIRRLPPGLT KEQLEEQLRP LPAHDYFEFF AADLSLYPHL YSRAYINFRN 120
121 PDDILLFRDR FDGYIFLDSK GLEYPAVVEF APFQKIAKKK LRKKDAKTGS IEDDPEYKKF 180
181 LETYCVEEEK TSANPETLLG EMEAKTRELI ARRTTPLLEY IKNRKLEKQR IREEKREERR 240
241 RRELEKKRLR EEEKRRRREE ERCKKKETDK QKKIAEKEVR IKLLKKPEKG EEPTTEKPKE 300
301 RGEEIDTGGG KQESCAPGAV VKARPMEGSL EEPQETSHS
|
| Detection Method: |  |
| Confidence: | 10.221849 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [340-476] |
1 11 21 31 41 51
| | | | | |
1 GSDKEHRDVE RSQEQESEAQ RYHVDDGRRH RAHHEPERLS RRSEDEQRWG KGPGQDRGKK 60
61 GSQDSGAPGE AMERLGRAQR CDDSPAPRKE RLANKDRPAL QLYDPGARFR ARECGGNRRI 120
121 CKAEGSGTGP EKREEAE
|
| Detection Method: | |
| Confidence: | 11.39794 |
| Match: | 1w9rA |
| Description: | Solution Structure of Choline Binding Protein A, Domain R2, the Major Adhesin of Streptococcus pneumoniae |
Matching Structure (courtesy of the PDB): |
|
