YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS11
Organism:	Homo sapiens
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS11.

Description	E-value	Query Range	Subject Range
gi\|60653355 - gi\|60653355\|gb\|AAX29372.1\| ribosomal protein S11 [synthetic construct]	270.0	[0..1]	[158..1]
gi\|66792924, gi\|... - gi\|66792924\|ref\|NP_001019739.1\| ribosomal protein S11 [Bos taurus], gi\|58760444\|gb\|AAW82130.1\| ribos...	266.0	[0..1]	[158..1]
gi\|52346138, gi\|... - gi\|89269536\|emb\|CAJ82415.1\| ribosomal protein S11 [Xenopus tropicalis], gi\|52346138\|ref\|NP_001005113...	266.0	[0..1]	[158..1]
gi\|13516490, gi\|... - gi\|71895103\|ref\|NP_001026004.1\| ribosomal protein S11 [Gallus gallus], gi\|13516490\|dbj\|BAB40319.1\| r...	266.0	[0..1]	[158..1]
gi\|34849855 - gi\|34849855\|gb\|AAH58465.1\| Ribosomal protein S11 [Rattus norvegicus]	265.0	[0..1]	[158..1]
gi\|32450493, gi\|... - gi\|32450493\|gb\|AAH53813.1\| Rps11 protein [Xenopus laevis], gi\|148228908\|ref\|NP_001080676.1\| ribosoma...	264.0	[0..1]	[158..1]
gi\|12836870 - gi\|12836870\|dbj\|BAB23843.1\| unnamed protein product [Mus musculus]	262.0	[0..1]	[148..1]
gi\|109072634, gi... - gi\|109072634\|ref\|XP_001099239.1\| PREDICTED: similar to ribosomal protein S11 isoform 1 [Macaca mulat...	261.0	[0..1]	[158..1]
gi\|49619071 - gi\|49619071\|gb\|AAT68120.1\| 40S ribosomal protein s11 [Danio rerio]	254.0	[0..1]	[158..1]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIQTERAY QKQPTIFQNK KRVLLGETGK EKLPRYYKNI GLGFKTPKEA IEGTYIDKKC  60
   61 PFTGNVSIRG RILSGVVTKM KMQRTIVIRR DYLHYIRKYN RFEKRHKNMS VHLSPCFRDV 120
  121 QIGDIVTVGE CRPLSKTVRF NVLKVTKAAG TKKQFQKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1s1hQ
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits