| Protein: | PAF1 |
| Organism: | Homo sapiens |
| Length: | 531 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAF1.
| Description | E-value | Query Range |
Subject Range |
|
|
390.0 | [0..1] | [370..1] |
|
|
334.0 | [0..1] | [455..1] |
|
|
334.0 | [0..1] | [377..1] |
|
|
334.0 | [0..1] | [517..1] |
|
|
331.0 | [0..1] | [455..1] |
|
|
331.0 | [0..1] | [455..1] |
|
Region A: Residues: [1-81] |
1 11 21 31 41 51
| | | | | |
1 MAPTIQTQAQ REDGHRPNSH RTLPERSGVV CRVKYCNSLP DIPFDPKFIT YPFDQNRFVQ 60
61 YKATSLEKQH KHDLLTEPDL G
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.539 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.465 | g.39.1 | Glucocorticoid receptor-like (DNA-binding domain) |
| View | Download | 0.465 | g.39.1 | Glucocorticoid receptor-like (DNA-binding domain) |
| View | Download | 0.417 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.417 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.401 | a.4.1 | Homeodomain-like |
| View | Download | 0.376 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.305 | c.47.1 | Thioredoxin-like |
|
Region A: Residues: [82-262] |
1 11 21 31 41 51
| | | | | |
1 VTIDLINPDT YRIDPNVLLD PADEKLLEEE IQAPTSSKRS QQHAKVVPWM RKTEYISTEF 60
61 NRYGISNEKP EVKIGVSVKQ QFTEEEIYKD RDSQITAIEK TFEDAQKSIS QHYSKPRVTP 120
121 VEVMPVFPDF KMWINPCAQV IFDSDPAPKD TSGAAALEMM SQAMIRGMMD EEGNQFVAYF 180
181 L
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [263-383] |
1 11 21 31 41 51
| | | | | |
1 PVEETLKKRK RDQEEEMDYA PDDVYDYKIA REYNWNVKNK ASKGYEENYF FIFREGDGVY 60
61 YNELETRVRL SKRRAKAGVQ SGTNALLVVK HRDMNEKELE AQEARKAQLE NHEPEEEEEE 120
121 E
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.550 | d.379.1 | Description not found. |
| View | Download | 0.450 | d.44.1 | Fe,Mn superoxide dismutase (SOD), C-terminal domain |
| View | Download | 0.450 | d.44.1 | Fe,Mn superoxide dismutase (SOD), C-terminal domain |
| View | Download | 0.423 | d.379.1 | Description not found. |
| View | Download | 0.410 | a.160.1 | Poly(A) polymerase, middle domain |
| View | Download | 0.380 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.380 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.375 | d.44.1 | Fe,Mn superoxide dismutase (SOD), C-terminal domain |
| View | Download | 0.305 | a.24.3 | Cytochromes |
| View | Download | 0.299 | b.55.1 | PH domain-like |
|
Region A: Residues: [384-531] |
1 11 21 31 41 51
| | | | | |
1 METEEKEAGG SDEEQEKGSS SEKEGSEDEH SGSESEREEG DRDEASDKSG SGEDESSEDE 60
61 ARAARDKEEI FGSDADSEDD ADSDDEDRGQ AQGGSDNDSD SGSNGGGQRS RSHSRSASPF 120
121 PSGSEHSAQE DGSEAAASDS SEADSDSD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
