| Protein: | ZMYND11 |
| Organism: | Homo sapiens |
| Length: | 562 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ZMYND11.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..562] | [24..585] |
|
|
0.0 | [1..562] | [41..602] |
|
|
0.0 | [1..562] | [41..602] |
|
|
0.0 | [1..562] | [41..602] |
|
|
0.0 | [1..562] | [1..562] |
|
|
0.0 | [1..562] | [1..562] |
|
Region A: Residues: [1-78] |
1 11 21 31 41 51
| | | | | |
1 MSRVHGMHPK ETTRQLSLAV KDGLIVETLT VGCKGSKAGI EQEGYWLPGD EIDWETENHD 60
61 WYCFECHLPG EVLICDLC
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.240 | 0.280 | negative regulation of transcription from RNA polymerase II promoter | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.274 | 0.215 | negative regulation of transcription from RNA polymerase II promoter | a.3.1 | Cytochrome c |
| View | Download | 0.349 | 0.134 | negative regulation of transcription from RNA polymerase II promoter | d.15.4 | 2Fe-2S ferredoxin-like |
|
Region A: Residues: [79-228] |
1 11 21 31 41 51
| | | | | |
1 FRVYHSKCLS DEFRLRDSSS PWQCPVCRSI KKKNTNKQEM GTYLRFIVSR MKERAIDLNK 60
61 KGKDNKHPMY RRLVHSAVDV PTIQEKVNEG KYRSYEEFKA DAQLLLHNTV IFYGADSEQA 120
121 DIARMLYKDT CHELDELQLC KNCFYLSNAR
|
| Detection Method: | |
| Confidence: | 24.30103 |
| Match: | 2f6jA |
| Description: | No description for 2f6jA was found. |
|
Region A: Residues: [229-402] |
1 11 21 31 41 51
| | | | | |
1 PDNWFCYPCI PNHELVWAKM KGFGFWPAKV MQKEDNQVDV RFFGHHHQRA WIPSENIQDI 60
61 TVNIHRLHVK RSMGWKKACD ELELHQRFLR EGRFWKSKNE DRGEEEAESS ISSTSNEQLK 120
121 VTQEPRAKKG RRNQSVEPKK EEPEPETEAV SSSQEIPTMP QPIEKVSVST QTKK
|
| Detection Method: | |
| Confidence: | 13.154902 |
| Match: | 2b8aA |
| Description: | High Resolution Structure of the HDGF PWWP Domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [403-474] |
1 11 21 31 41 51
| | | | | |
1 LSASSPRMLH RSTQTTNDGV CQSMCHDKYT KIFNDFKDRM KSDHKRETER VVREALEKLR 60
61 SEMEEEKRQA VN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.786 | a.4.1 | Homeodomain-like |
| View | Download | 0.601 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.777 | a.4.1 | Homeodomain-like |
| View | Download | 0.668 | a.4.1 | Homeodomain-like |
| View | Download | 0.634 | a.4.1 | Homeodomain-like |
|
Region A: Residues: [475-562] |
1 11 21 31 41 51
| | | | | |
1 KAVANMQGEM DRKCKQVKEK CKEEFVEEIK KLATQHKQLI SQTKKKQWCY NCEEEAMYHC 60
61 CWNTSYCSIK CQQEHWHAEH KRTCRRKR
|
| Detection Method: | |
| Confidence: | 2.31 |
| Match: | 2d8qA |
| Description: | No description for 2d8qA was found. |
