YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG3
Organism:	Homo sapiens
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG3.

Description	E-value	Query Range	Subject Range
ATG3_MOUSE - Ubiquitin-like-conjugating enzyme ATG3 OS=Mus musculus GN=Atg3 PE=1 SV=1	0.0	[1..314]	[1..314]
gi\|109033028 - gi\|109033028\|ref\|XP_001104361.1\| PREDICTED: similar to Apg3p [Macaca mulatta]	0.0	[1..314]	[1..314]
ATG3_BOVIN - Ubiquitin-like-conjugating enzyme ATG3 OS=Bos taurus GN=ATG3 PE=2 SV=1	0.0	[1..314]	[1..314]
gi\|19705511, gi\|... - gi\|9957034\|gb\|AAG09182.1\|AF175224_1 preconditioning-inducible gene 1 protein [Rattus norvegicus], gi...	0.0	[1..314]	[1..314]
gi\|74002684 - gi\|74002684\|ref\|XP_535740.2\| PREDICTED: similar to Apg3p [Canis familiaris]	0.0	[5..314]	[3..312]
ATG3_DANRE - Ubiquitin-like-conjugating enzyme ATG3 OS=Danio rerio GN=atg3 PE=2 SV=1	0.0	[1..314]	[1..317]
ATG3_XENLA - Ubiquitin-like-conjugating enzyme ATG3 OS=Xenopus laevis GN=atg3 PE=2 SV=1	0.0	[1..314]	[1..313]
gi\|50729624 - gi\|50729624\|ref\|XP_416588.1\| PREDICTED: hypothetical protein [Gallus gallus]	0.0	[1..314]	[1..313]
ATG3_XENTR - Ubiquitin-like-conjugating enzyme ATG3 OS=Xenopus tropicalis GN=atg3 PE=2 SV=1	0.0	[1..314]	[1..312]

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Predicted Domain #1

Region A:
Residues: [1-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNVINTVKG KALEVAEYLT PVLKESKFKE TGVITPEEFV AAGDHLVHHC PTWQWATGEE  60
   61 LKVKAYLPTG KQFLVTKNVP CYKRCKQMEY SDELEAIIEE DDGDGGWVDT YHNTGITGIT 120
  121 EAVKEITLEN KDNIRLQDCS ALCEEEEDED EGEAADMEEY EESGLLETDE ATLDTRKIVE 180
  181 ACKAKTDAGG EDAILQTRTY DLYITYDKYY QTPRLWLFGY DEQRQPLTVE HMYEDISQDH 240
  241 VKKTVTIENH PHLPPPPMCS VHPCRHAEVM KKIIETVAEG GGELGVHMYL LIFLKFVQAV 300
  301 IPTIEYDYTR HFTM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.045757
Match:	2dytA
Description:	No description for 2dytA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits