YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: POLDIP3
Organism: Homo sapiens
Length: 421 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POLDIP3.

Description E-value Query
Range
Subject
Range
gi|109481061, gi... - gi|194473638|ref|NP_001123978.1| polymerase (DNA-directed), delta interacting protein 3 [Rattus norv...
8.0E-91 [1..421] [1..420]
gi|114686810 - gi|114686810|ref|XP_515172.2| PREDICTED: similar to KIAA1649 protein [Pan troglodytes]
8.0E-90 [1..421] [85..505]
gi|34327982 - gi|34327982|dbj|BAB33368.2| KIAA1649 protein [Homo sapiens]
1.0E-89 [1..421] [4..424]
PDIP3_MOUSE - Polymerase delta-interacting protein 3 OS=Mus musculus GN=Poldip3 PE=1 SV=1
1.0E-88 [1..421] [1..420]
gi|109094475 - gi|109094475|ref|XP_001103556.1| PREDICTED: similar to DNA polymerase delta interacting protein 3 is...
1.0E-88 [1..421] [121..541]
gi|76617066, gi|... - gi|76617068|ref|XP_590255.2| PREDICTED: similar to KIAA1649 protein isoform 1 [Bos taurus], gi|76617...
3.0E-87 [1..421] [1..421]

Back

Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADISLDELI RKRGAAAKGR LNARPGVGGV RSRVGIQQGL LSQSTRTATF QQRFDARQKI  60
   61 GLSDARLKLG VKDAREKLLQ KDARFRIKGK VQDAREMLNS RKQQTTVPQK PRQVADAREK 120
  121 ISLKRSSPAA FINPPIGTVT PALKLTKTIQ VPQQKAMAPL HPHPAGMRIN VVNNHQAKQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [180-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLYDLDEDDD GIASVPTKQM KFAASGGFLH HMAGLSSSKL SMSKALPLTK VVQNDAYTAP  60
   61 ALPSSIRTKA LTNMSRTLVN KEEPPKELPA AEPVLSPLEG TKMTVNNLHP RVTEEDIVEL 120
  121 FCVCGALKRA RLVHPGVAEV VFVKKDDAIT AYKKYNNRCL D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.045757
Match: 1up1A
Description: UP1, THE TWO RNA-RECOGNITION MOTIF DOMAIN OF HNRNP A1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.950788308762215 bayes_pls_golite062009
nucleic acid binding 0.29562225149076 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [341-421]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQPMKCNLHM NGNVITSDQP ILLRLSDSPS MKKESELPRR VNSASSSNPP AEVDPDTILK  60
   61 ALFKSSGASV TTQPTEFKIK L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.0
Match: 2adcA
Description: Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.950788308762215 bayes_pls_golite062009
nucleic acid binding 0.29562225149076 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle