| Protein: | RGPD7 |
| Organism: | Homo sapiens |
| Length: | 904 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGPD7.
| Description | E-value | Query Range |
Subject Range |
|
|
1103.0 | [0..1] | [869..1] |
|
|
1068.0 | [0..1] | [869..1] |
|
|
1064.0 | [0..1] | [869..1] |
|
|
1062.0 | [0..1] | [869..1] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MRRSKADVER YVASVLGLTP SPRQKSMKGF YFAKLYYEAK EYDLAKKYIC TYINVQERDP 60
61 KAHRFLGLLY ELEENTEKAV ECYRRSVEL
|
| Detection Method: |  |
| Confidence: | 6.30103 |
| Match: | 1hh8A |
| Description: | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [90-394] |
1 11 21 31 41 51
| | | | | |
1 NPTQKDLVLK IAELLCKNDV TDGRAKYWVE RAAKLFPGSP AIYKLKEQLL DCEGEDGWNK 60
61 LFDLIQSELY VRPDDVHVNI RLVELYRSTK RLKDAVAHCH EAERNIALRS SLEWNSCVVQ 120
121 TLKEYLESLQ CLESDKSDWQ ATNTDLLLAY ANLMLLTLST RDVQENRELL ESFDSALQSA 180
181 KSSLGGNDEL SATFLEMKGH FYMYAGSLLL KMGQHGNNVQ WRALSELAAL CYLIAFQVPR 240
241 PKIKLREGKA GQNLLEMMAC DRLSQSGHML LSLSRGKQDF LKEVVETFAN KIGQSALYDA 300
301 LFSSQ
|
| Detection Method: | |
| Confidence: | 7.39794 |
| Match: | 1o1rA |
| Description: | Protein farnesyltransferase alpha-subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [395-475] |
1 11 21 31 41 51
| | | | | |
1 SPKDTSFLGS DDIGKIDVQE PELEDLARYD VGAIRAHNGS LQHLTWLGLQ WNSLPALPGI 60
61 RKWLKQLFHR LPHETSRLET N
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.789 | a.118.1 | ARM repeat |
| View | Download | 0.689 | a.240.1 | Description not found. |
| View | Download | 0.416 | a.190.1 | Description not found. |
| View | Download | 0.412 | a.77.1 | DEATH domain |
| View | Download | 0.412 | a.77.1 | DEATH domain |
| View | Download | 0.410 | a.140.6 | Description not found. |
| View | Download | 0.395 | d.93.1 | SH2 domain |
| View | Download | 0.350 | d.93.1 | SH2 domain |
| View | Download | 0.330 | a.77.1 | DEATH domain |
| View | Download | 0.320 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.301 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.300 | a.240.1 | Description not found. |
| View | Download | 0.282 | d.52.8 | Description not found. |
| View | Download | 0.220 | a.39.4 | Hypothetical protein MTH865 |
|
Region A: Residues: [476-571] |
1 11 21 31 41 51
| | | | | |
1 APESICILDL EVFLLGVVYT SHLQLKEKCN SHHSSYQPLC LPFPVCKQLC TERQKSWWDA 60
61 VCTLIHRKAV PGNLAKLRLL VQHEINTLRA QEKHGL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.877 | a.7.11 | Description not found. |
| View | Download | 0.831 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.507 | c.47.1 | Thioredoxin-like |
| View | Download | 0.436 | a.7.16 | Description not found. |
| View | Download | 0.417 | a.28.1 | ACP-like |
| View | Download | 0.329 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.317 | a.39.1 | EF-hand |
| View | Download | 0.303 | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.280 | a.39.1 | EF-hand |
|
Region A: Residues: [572-732] |
1 11 21 31 41 51
| | | | | |
1 QPALLVHWAK YLQKTGSGLN SFYGQLEYIG RSVHYWKKVL PLLKIIKKNS IPEPIDPLFK 60
61 HFHSVDIQAS EIVEYEEDAH ITFAMLDAVN GNIEDAVTAF ESIKSVVSYW NLALIFHRKA 120
121 EDIENDALSP EEQEECRNYL TKTRDYLIKI IDDGDSNLSV V
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [733-904] |
1 11 21 31 41 51
| | | | | |
1 KKLPVPLESV KQMLNSVMQE LEDYSEGGPL YKNGSLRNAD SEIKHSTPSP TKYSLSPSKS 60
61 YKYSPETPPR WTEDRNSLLN MICQQVEAIK KEMQELKLNS SKSASRHRWP TENYGPDSVP 120
121 DGYQGSQTFH GAPLTEAAHR HFTIEKHGDS KWIIYRFTKQ LCGTERARAK IS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
