YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5689503, gi\|1...
Organism:	Homo sapiens
Length:	584 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5689503, gi|1....

Description	E-value	Query Range	Subject Range
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...	0.0	[16..579]	[165..728]
gi\|18159541, gi\|... - gi\|18312110\|ref\|NP_558777.1\| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str....	0.0	[26..578]	[172..713]
gi\|119524342, gi... - gi\|119719222\|ref\|YP_919717.1\| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5]...	0.0	[20..578]	[170..716]
gi\|15920578, gi\|... - gi\|15920578\|ref\|NP_376247.1\| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7], gi\|15621361\|d...	0.0	[15..584]	[161..747]
gi\|5106179, gi\|1... - gi\|5106179\|dbj\|BAA81490.1\| 699aa long hypothetical transitional endoplasmic reticulum ATPase [Aeropy... gi\|7435761 - pir\|\|B72479 probable transitional endoplasmic reticulum ATPase APE2474 - Aeropyrum pernix (strain K1...	8.0E-99	[20..577]	[137..681]
gi\|70606628, gi\|... - gi\|70606628\|ref\|YP_255498.1\| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639], gi\|68567...	3.0E-98	[28..579]	[174..742]
SAV_SULAC - Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIM... SAV_SULAC - Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2	6.0E-98	[28..579]	[207..775]
gi\|88950711, gi\|... - gi\|88950711\|ref\|ZP_01153285.1\| AAA ATPase, CDC48 [Methanosaeta thermophila PT], gi\|88929910\|gb\|EAR48...	9.0E-98	[16..579]	[175..724]

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Predicted Domain #1

Region A:
Residues: [1-584]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSPGGRGKK KGSGGASNPV PPRPPPPCLA PAPPAAGPAP PPESPHKRNL YYFSYPLFVG  60
   61 FALLRLVAFH LGLLFVWLCQ RFSRALMAAK RSSGAAPAPA SASAPAPVPG GEAERVRVFH 120
  121 KQAFEYISIA LRIDEDEKAG QKEQAVEWYK KGIEELEKGI AVIVTGQGEQ CERARRLQAK 180
  181 MMTNLVMAKD RLQLLESGAV PKRKDPLTHT SNSLPRSKTV MKTGSAGLSG HHRAPSYSGL 240
  241 SMVSGVKQGS GPAPTTHKGT PKTNRTNKPS TPTTATRKKK DLKNFRNVDS NLANLIMNEI 300
  301 VDNGTAVKFD DIAGQDLAKQ ALQEIVILPS LRPELFTGLR APARGLLLFG PPGNGKTMLA 360
  361 KAVAAESNAT FFNISAASLT SKYVGEGEKL VRALFAVARE LQPSIIFIDE VDSLLCERRE 420
  421 GEHDASRRLK TEFLIEFDGV QSAGDDRVLV MGATNRPQEL DEAVLRRFIK RVYVSLPNEE 480
  481 TRLLLLKNLL CKQGSPLTQK ELAQLARMTD GYSGSDLTAL AKDAALGPIR ELKPEQVKNM 540
  541 SASEMRNIRL SDFTESLKKI KRSVSPQTLE AYIRWNKDFG DTTV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.0
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits