YRC Public Data Repository - Protein Structure Prediction

Protein:	LANCL2
Organism:	Homo sapiens
Length:	450 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LANCL2.

Description	E-value	Query Range	Subject Range
gi\|62079109, gi\|... - gi\|62647345\|ref\|XP_216158.3\| PREDICTED: similar to LanC (bacterial lantibiotic synthetase component ...	0.0	[1..450]	[1..450]
gi\|47125269, gi\|... - gi\|51094557\|gb\|EAL23810.1\| LanC lantibiotic synthetase component C-like 2 (bacterial) [Homo sapiens]...	0.0	[1..450]	[1..450]
LANC2_MOUSE - LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1	0.0	[1..450]	[1..450]
gi\|109066510 - gi\|109066510\|ref\|XP_001090911.1\| PREDICTED: LanC lantibiotic synthetase component C-like 2 isoform 2...	0.0	[1..450]	[1..450]
gi\|50733024 - gi\|50733024\|ref\|XP_418874.1\| PREDICTED: similar to LanC lantibiotic synthetase component C-like 2; t...	0.0	[5..450]	[1..444]
gi\|54695592, gi\|... - gi\|61367019\|gb\|AAX42940.1\| LanC lantibiotic synthetase component C-like 1 [synthetic construct], gi\|...	0.0	[19..444]	[1..399]

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Predicted Domain #1

Region A:
Residues: [1-450]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGETMSKRLK LHLGGEAEME ERAFVNPFPD YEAAAGALLA SGAAEETGCV RPPATTDEPG  60
   61 LPFHQDGKII HNFIRRIQTK IKDLLQQMEE GLKTADPHDC SAYTGWTGIA LLYLQLYRVT 120
  121 CDQTYLLRSL DYVKRTLRNL NGRRVTFLCG DAGPLAVGAV IYHKLRSDCE SQECVTKLLQ 180
  181 LQRSVVCQES DLPDELLYGR AGYLYALLYL NTEIGPGTVC ESAIKEVVNA IIESGKTLSR 240
  241 EERKTERCPL LYQWHRKQYV GAAHGMAGIY YMLMQPAAKV DQETLTEMVK PSIDYVRHKK 300
  301 FRSGNYPSSL SNETDRLVHW CHGAPGVIHM LMQAYKVFKE EKYLKEAMEC SDVIWQRGLL 360
  361 RKGYGICHGT AGNGYSFLSL YRLTQDKKYL YRACKFAEWC LDYGAHGCRI PDRPYSLFEG 420
  421 MAGAIHFLSD VLGPETSRFP AFELDSSKRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	2g02A
Description:	No description for 2g02A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits