YRC Public Data Repository - Protein Structure Prediction

Protein:	C1GALT1
Organism:	Homo sapiens
Length:	363 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C1GALT1.

Description	E-value	Query Range	Subject Range
gi\|40352886, gi\|... - gi\|40538830\|ref\|NP_443719.2\| core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltr...	0.0	[1..363]	[1..363]
C1GLT_RAT - Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Rattus norvegicus GN=C1galt1 PE...	0.0	[1..363]	[1..363]
gi\|109067386, gi... - gi\|109067388\|ref\|XP_001088179.1\| PREDICTED: similar to core 1 synthase, glycoprotein-N-acetylgalacto...	0.0	[1..363]	[1..363]
gi\|114612126 - gi\|114612126\|ref\|XP_527663.2\| PREDICTED: core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-...	2.0E-99	[1..363]	[1..363]
gi\|73975845 - gi\|73975845\|ref\|XP_539431.2\| PREDICTED: similar to core 1 synthase, glycoprotein-N-acetylgalactosami...	5.0E-96	[1..359]	[1..359]
C1GLT_BOVIN - Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Bos taurus GN=C1GALT1 PE=2 SV=1	8.0E-95	[1..358]	[1..358]
C1GLT_CHICK - Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Gallus gallus GN=C1GALT1 PE=2 S...	4.0E-84	[1..355]	[1..355]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKSWLNFL TFLCGSAIGF LLCSQLFSIL LGEKVDTQPN VLHNDPHARH SDDNGQNHLE  60
   61 GQMNFNADSS QHKDENTDIA ENLY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKVRILCWVM TGPQNLEKKA KHVKATWAQR CNKVLFMSSE ENKDFPAVGL KTKEGRDQLY  60
   61 WKTIKAFQYV HEHYLEDADW FLKADDDTYV ILDNLRWLLS KYDPEEPIYF GRRFKPYVKQ 120
  121 GYMSGGAGYV LSKEALKRFV DAFKTDKCTH SSSIEDLALG RCMEIMNVEA GDSRDTIGKE 180
  181 TFHPFVPEHH LIKGYLPRTF WYWNYNYYPP VEGPGCCSDL AVSFHYVDST TMYELEYLVY 240
  241 HLRPYGYLYR YQPTLPERIL KEISQANKNE DTKVKLGNP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	2j0aA
Description:	No description for 2j0aA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits