YRC Public Data Repository - Protein Structure Prediction

Protein:	C7orf36
Organism:	Homo sapiens
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C7orf36.

Description	E-value	Query Range	Subject Range
gi\|123986182, gi... - gi\|123998970\|gb\|ABM87074.1\| chromosome 7 open reading frame 36 [synthetic construct], gi\|123998968\|g... gi\|18314450 - gi\|18314450\|gb\|AAH22043.1\| Chromosome 7 open reading frame 36 [Homo sapiens]	368.0	[0..1]	[226..1]
gi\|114612978 - gi\|114612978\|ref\|XP_001134829.1\| PREDICTED: similar to GK003 [Pan troglodytes]	368.0	[0..1]	[226..1]
gi\|109066773 - gi\|109066773\|ref\|XP_001099543.1\| PREDICTED: hypothetical protein [Macaca mulatta]	363.0	[0..1]	[226..1]
gi\|157816887, gi... - gi\|62663635\|ref\|XP_225401.3\| PREDICTED: hypothetical protein [Rattus norvegicus], gi\|157816887\|ref\|N...	340.0	[0..1]	[226..1]
gi\|73981903 - gi\|73981903\|ref\|XP_851394.1\| PREDICTED: hypothetical protein XP_846301 [Canis familiaris]	323.0	[0..1]	[226..1]
gi\|76634576 - gi\|76634576\|ref\|XP_585411.2\| PREDICTED: hypothetical LOC508613 isoform 1 [Bos taurus]	322.0	[0..1]	[226..1]
gi\|12837962, gi\|... - gi\|74207328\|dbj\|BAE30848.1\| unnamed protein product [Mus musculus], gi\|29145090\|gb\|AAH48453.1\| RIKEN...	317.0	[0..1]	[226..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWVQAASLI QGPGDKGDVF DEEADESLLA QREWQSNMQR RVKEGYRDGI DAGKAVTLQQ  60
   61 GFNQGYKKGA EVILNYGRLR GTLSALLSWC HLHNNN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STLINKINNL LDAVGQCEEY VLKHLKSITP PSHVVDLLDS IEDMDLCHVV PAEKKIDEAK  60
   61 DERLCENNAE FNKNCSKSHS GIDCSYVECC RTQEHAHSEN PSPTWILEQT ASLVKQLGLS 120
  121 VDVLQHLKQL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits