YRC Public Data Repository - Protein Structure Prediction

Protein:	POP5
Organism:	Homo sapiens
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POP5.

Description	E-value	Query Range	Subject Range
POP5_MOUSE - Ribonuclease P/MRP protein subunit POP5 OS=Mus musculus GN=Pop5 PE=1 SV=1	1.0E-60	[1..163]	[1..169]
POP5_BOVIN - Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus GN=POP5 PE=2 SV=1	3.0E-59	[1..163]	[1..170]
gi\|73994750 - gi\|73994750\|ref\|XP_534710.2\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP sub...	5.0E-57	[1..163]	[1..170]
gi\|62897973 - gi\|62897973\|dbj\|BAD96926.1\| processing of precursor 5, ribonuclease P/MRP subunit isoform a variant ...	3.0E-55	[1..148]	[1..148]
gi\|109497347, gi... - gi\|27666062\|ref\|XP_213794.1\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP fam...	4.0E-55	[1..151]	[1..151]
gi\|114647328 - gi\|114647328\|ref\|XP_001162438.1\| PREDICTED: processing of precursor 5, ribonuclease P/MRP subunit is...	1.0E-52	[1..148]	[1..186]
gi\|50756667 - gi\|50756667\|ref\|XP_415266.1\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP fam...	1.0E-40	[1..153]	[337..488]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFKHRYLL CELVSDDPRC RLSLDDRVLS SLVRDTIARV HGTFGAAACS IGFAVRYLNA  60
   61 YTGIVLLRCR KEFYQLVWSA LPFITYLENK GHRYPCFFNT LHVGGTIRTC QKFLIQYNRR 120
  121 QLLILLQNCT DEGEREAIQK SVTRSCLLEE EEESGEEAAE AME

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	2czvC
Description:	No description for 2czvC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits