YRC Public Data Repository - Protein Structure Prediction

Protein:	TSR2
Organism:	Homo sapiens
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TSR2.

Description	E-value	Query Range	Subject Range
gi\|109130877 - gi\|109130877\|ref\|XP_001090023.1\| PREDICTED: hypothetical protein [Macaca mulatta]	1.0E-53	[1..191]	[1..191]
TSR2_MOUSE - Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus GN=Tsr2 PE=1 SV=1	9.0E-53	[1..191]	[1..191]
gi\|57111799 - gi\|57111799\|ref\|XP_538053.1\| PREDICTED: similar to CG14543-PA [Canis familiaris]	3.0E-51	[1..191]	[1..189]
TSR2_BOVIN - Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus GN=TSR2 PE=2 SV=1	3.0E-49	[1..191]	[1..190]
gi\|37681785 - gi\|37681785\|gb\|AAQ97770.1\| hypothetical protein DT1P1A10 [Danio rerio]	3.0E-44	[1..191]	[1..182]
gi\|44983704 - gi\|44983704\|gb\|AAS52803.1\| AER119Wp [Ashbya gossypii ATCC 10895] gi\|45190725, gi\|... - gi\|45190725\|ref\|NP_984979.1\| AER119Wp [Ashbya gossypii ATCC 10895], gi\|44983704\|gb\|AAS52803.1\| AER11...	4.0E-44	[6..189]	[25..199]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAAEDARA LFRAGVCAAL EAWPALQIAV ENGFGGVHSQ EKAKWLGGAV EDYFMRNADL  60
   61 ELDEVEDFLG ELLTNEFDTV VEDGSLPQVS QQLQTMFHHF QRGDGAALRE MASCITQRKC 120
  121 KVTATALKTA RETDEDEDDV DSVEEMEVTA TNDGAATDGV CPQPEPSDPD AQTIKEEDIV 180
  181 EDGWTIVRRK K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits