YRC Public Data Repository - Protein Structure Prediction

Protein:	RRAGD
Organism:	Homo sapiens
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRAGD.

Description	E-value	Query Range	Subject Range
gi\|76625952 - gi\|76625952\|ref\|XP_614574.2\| PREDICTED: similar to Ras-related GTP binding D isoform 1 [Bos taurus]	2.0E-92	[1..400]	[1..397]
gi\|157820377, gi... - gi\|187469778\|gb\|AAI67014.1\| Ras-related GTP binding D [Rattus norvegicus], gi\|157820377\|ref\|NP_00110...	3.0E-92	[1..400]	[1..399]
RRAGD_MOUSE - Ras-related GTP-binding protein D OS=Mus musculus GN=Rragd PE=2 SV=2	9.0E-91	[1..400]	[1..449]
gi\|109072056 - gi\|109072056\|ref\|XP_001091094.1\| PREDICTED: similar to Ras-related GTP binding D [Macaca mulatta]	1.0E-86	[41..400]	[78..437]
gi\|73973907 - gi\|73973907\|ref\|XP_532231.2\| PREDICTED: similar to Ras-related GTP binding D [Canis familiaris]	8.0E-86	[40..400]	[55..415]
gi\|50744702 - gi\|50744702\|ref\|XP_419838.1\| PREDICTED: similar to Ras-related GTP binding D; Rag D protein [Gallus ...	3.0E-85	[48..400]	[677..1029]
gi\|114608468 - gi\|114608468\|ref\|XP_518637.2\| PREDICTED: Ras-related GTP binding D isoform 4 [Pan troglodytes]	2.0E-84	[41..400]	[27..386]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQVLGKPQP QDEDDAEEEE EEDELVGLAD YGDGPDSSDA DPDSGTEEGV LDFSDPFSTE  60
   61 VKPRILLMGL RRSGKSSIQK VVFHKMSPNE TLFLESTNKI CREDVSNSSF VNFQIWDFPG 120
  121 QIDFFDPTFD YEMIFRGTGA LIFVIDSQDD YMEALARLHL TVTRAYKVNT DINFEVFIHK 180
  181 VDGLSDDHKI ETQRDIHQRA NDDLADAGLE KIHLSFYLTS IYDHSIFEAF SKVVQKLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	2q3fA
Description:	No description for 2q3fA was found.

Predicted Domain #2

Region A:
Residues: [239-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQLPTLENLL NIFISNSGIE KAFLFDVVSK IYIATDSTPV DMQTYELCCD MIDVVIDISC  60
   61 IYGLKEDGAG TPYDKESTAI IKLNNTTVLY LKEVTKFLAL VCFVREESFE RKGLIDYNFH 120
  121 CFRKAIHEVF EVRMKVVKSR KVQNRLQKKK RATPNGTPRV LL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.968
Match:	1j3wA
Description:	Structure of Gliding protein-mglB from Thermus Thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.13212621815934	bayes_pls_golite062009
protein binding	1.94302464224816	bayes_pls_golite062009
hydrolase activity	1.72993954630083	bayes_pls_golite062009
signal transducer activity	1.01677638017819	bayes_pls_golite062009
molecular transducer activity	1.01677638017819	bayes_pls_golite062009
catalytic activity	0.414880787313138	bayes_pls_golite062009
motor activity	0.225472578215741	bayes_pls_golite062009
microtubule motor activity	0.19010053360226	bayes_pls_golite062009
enzyme regulator activity	0.174168038925606	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: