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View Structure Prediction Details

Protein: RRS1
Organism: Homo sapiens
Length: 365 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRS1.

Description E-value Query
Range
Subject
Range
gi|109086632 - gi|109086632|ref|XP_001100635.1| PREDICTED: similar to homolog of yeast ribosome biogenesis regulato...
0.0 [1..365] [166..530]
gi|49022822 - gi|49022822|dbj|BAC65489.2| mKIAA0112 protein [Mus musculus]
0.0 [1..365] [9..373]
RRS1_RAT - Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus GN=Rrs1 PE=2 SV=1
0.0 [1..365] [1..365]
gi|434779 - gi|434779|dbj|BAA04948.1| KIAA0112 [Homo sapiens]
0.0 [1..365] [35..399]
RRS1_BOVIN - Ribosome biogenesis regulatory protein homolog OS=Bos taurus GN=RRS1 PE=2 SV=1
0.0 [1..365] [1..365]
gi|57107921 - gi|57107921|ref|XP_544107.1| PREDICTED: similar to homolog of yeast ribosome biogenesis regulatory p...
0.0 [1..365] [1..365]

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Predicted Domain #1
Region A:
Residues: [1-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGQSVEELL AKAEQDEAEK LQRITVHKEL ELQFDLGNLL ASDRNPPTGL RCAGPTPEAE  60
   61 LQALARDNTQ LLINQLWQLP TERVEEAIVA RLPEPTTRLP REKPLPRPRP LTRWQQFARL 120
  121 KGIRPKKKTN LVWDEVSGQW RRRWGYQRAR DDTKEWLIEV PGNADPLEDQ FAKRIQAKKE 180
  181 RVAKNELNRL RNLARAHKMQ LPSAAGLHPT GHQSKEELGR AMQVAKVSTA SVGRFQERLP 240
  241 KEKVPRGSG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 127.886057
Match: PF04939.3
Description: No description for PF04939.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [250-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKRKFQPLFG DFAAEKKNQL ELLRVMNSKK PQLDVTRATN KQMREEDQEE AAKRRKMSQK  60
   61 GKRKGGRQGP GGKRKGGPPS QGGKRKGGLG GKMNSGPPGL GGKRKGGQRP GGKRRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle