YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|505102
Organism:	Homo sapiens
Length:	531 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|505102.

Description	E-value	Query Range	Subject Range
gi\|55729113 - gi\|55729113\|emb\|CAH91293.1\| hypothetical protein [Pongo abelii] gi\|55729113\|emb\|... - hypothetical protein [Pongo pygmaeus]	0.0	[1..531]	[7..535]
gi\|109085864 - gi\|109085864\|ref\|XP_001106660.1\| PREDICTED: similar to solute carrier family 39 (zinc transporter), ...	0.0	[1..531]	[214..743]
gi\|114619267 - gi\|114619267\|ref\|XP_531112.2\| PREDICTED: solute carrier family 39 (zinc transporter), member 14 [Pan...	0.0	[30..531]	[294..793]
S39AE_MOUSE - Zinc transporter ZIP14 OS=Mus musculus GN=Slc39a14 PE=1 SV=1	0.0	[45..531]	[4..489]
gi\|109502680, gi... - ref\|XP_224332.2\| similar to cDNA sequence BC021530 [Rattus norvegicus], gi\|109502680\|ref\|XP_00107014...	0.0	[45..531]	[4..487]
gi\|76624658 - gi\|76624658\|ref\|XP_593460.2\| PREDICTED: similar to solute carrier family 39 (zinc transporter), memb...	0.0	[44..531]	[71..558]
gi\|47271356, gi\|... - gi\|47271356\|ref\|NP_056174.1\| solute carrier family 39 (zinc transporter), member 14 [Homo sapiens], ...	0.0	[40..531]	[1..492]
gi\|73993770 - gi\|73993770\|ref\|XP_849535.1\| PREDICTED: similar to solute carrier family 39 (zinc transporter), memb...	0.0	[44..531]	[3..490]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVYADAPAKL LLPPPAAWDL AVRLRGAEAA SERQVYSVTM KLLLLHPAFQ SCLLLTLLGL  60
   61 WRTTPEAHAS SLGAPAISAA SFLQDLIHRY GEGDSLTLQQ LKALLNHLDV GVGRGNVTQH 120
  121 VQGHRNLSTC FSSGDLFTAH N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [142-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSEQSRIGSS ELQEFCPTIL QQLDSRACTS ENQENEENEQ TEEGRPSAVE VWGYGLLCVT  60
   61 VISLCSLLGA SVVPFMKKTF YKRLLLYFIA LAIGTLYSNA LFQLIPEAFG FNPLEDYYVS 120
  121 KSAVVFGGFY LFFFTEKILK ILLKQKNEHH HGHSHYASES LP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [304-531]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKKDQEEGVM EKLQNGDLDH MIPQHCSSEL DGKAPMVDEK VIVGSLSVQD LQASQSACYW  60
   61 LKGVRYSDIG TLAWMITLSD GLHNFIDGLA IGASFTVSVF QGISTSVAIL CEEFPHELGD 120
  121 FVILLNAGMS IQQALFFNFL SACCCYLGLA FGILAGSHFS ANWIFALAGG MFLYISLADM 180
  181 FPEMNEVCQE DERKGSILIP FIIQNLGLLT GFTIMVVLTM YSGQIQIG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits