| Protein: | HERC3 |
| Organism: | Homo sapiens |
| Length: | 1050 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HERC3.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1050] | [1..1050] |
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0.0 | [1..1050] | [1..1050] |
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0.0 | [1..1050] | [5..1054] |
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0.0 | [1..1050] | [1..1050] |
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0.0 | [1..1050] | [1..1051] |
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Region A: Residues: [1-425] |
1 11 21 31 41 51
| | | | | |
1 MLCWGYWSLG QPGISTNLQG IVAEPQVCGF ISDRSVKEVA CGGNHSVFLL EDGEVYTCGL 60
61 NTKGQLGHER EGNKPEQIGA LADQHIIHVA CGESHSLALS DRGQLFSWGA GSDGQLGLMT 120
121 TEDSVAVPRL IQKLNQQTIL QVSCGNWHCL ALAADGQFFT WGKNSHGQLG LGKEFPSQAS 180
181 PQRVRSLEGI PLAQVAAGGA HSFALSLSGA VFGWGMNNAG QLGLSDEKDR ESPCHVKLLR 240
241 TQKVVYISCG EEHTAVLTKS GGVFTFGAGS CGQLGHDSMN DEVNPRRVLE LMGSEVTQIA 300
301 CGRQHTLAFV PSSGLIYAFG CGARGQLGTG HTCNVKCPSP VKGYWAAHSG QLSARADRFK 360
361 YHIVKQIFSG GDQTFVLCSK YENYSPAVDF RTMNQAHYTS LINDETIAVW RQKLSEHNNA 420
421 NTING
|
| Detection Method: |  |
| Confidence: | 82.30103 |
| Match: | 1i2mB |
| Description: | Regulator of chromosome condensation RCC1 |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [426-520] |
1 11 21 31 41 51
| | | | | |
1 VVQILSSAAC WNGSFLEKKI DEHFKTSPKI PGIDLNSTRV LFEKLMNSQH SMILEQILNS 60
61 FESCLIPQLS SSPPDVEAMR IYLILPEFPL LQDSK
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| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
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Region A: Residues: [521-697] |
1 11 21 31 41 51
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1 YYITLTIPLA MAILRLDTNP SKVLDNWWSQ VCPKYFMKLV NLYKGAVLYL LRGRKTFLIP 60
61 VLFNNYITAA LKLLEKLYKV NLKVKHVEYD TFYIPEISNL VDIQEDYLMW FLHQAGMKAR 120
121 PSIIQDTVTL CSYPFIFDAQ AKTKMLQTDA ELQMQVAVNG ANLQNVFMLL TLEPLLA
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| Detection Method: | |
| Confidence: | 5.30103 |
| Match: | 1tk7A |
| Description: | NMR structure of WW domains (WW3-4) from Suppressor of Deltex |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [698-1050] |
1 11 21 31 41 51
| | | | | |
1 RSPFLVLHVR RNNLVGDALR ELSIHSDIDL KKPLKVIFDG EEAVDAGGVT KEFFLLLLKE 60
61 LLNPIYGMFT YYQDSNLLWF SDTCFVEHNW FHLIGITCGL AIYNSTVVDL HFPLALYKKL 120
121 LNVKPGLEDL KELSPTEGRS LQELLDYPGE DVEETFCLNF TICRESYGVI EQKKLIPGGD 180
181 NVTVCKDNRQ EFVDAYVNYV FQISVHEWYT AFSSGFLKVC GGKVLELFQP SELRAMMVGN 240
241 SNYNWEELEE TAIYKGDYSA THPTVKLFWE TFHEFPLEKK KKFLLFLTGS DRIPIYGMAS 300
301 LQIVIQSTAS GEEYLPVAHT CYNLLDLPKY SSKEILSARL TQALDNYEGF SLA
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| Detection Method: | |
| Confidence: | 130.0 |
| Match: | 1c4zA |
| Description: | Ubiquitin-protein ligase E3a, Hect catalytic domain (E6ap) |
Matching Structure (courtesy of the PDB): |
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