YRC Public Data Repository - Protein Structure Prediction

Protein:	PMAIP1
Organism:	Homo sapiens
Length:	54 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMAIP1.

Description	E-value	Query Range	Subject Range
gi\|109122354 - gi\|109122354\|ref\|XP_001091088.1\| PREDICTED: similar to phorbol-12-myristate-13-acetate-induced prote...	106.0	[0..1]	[54..147]
gi\|11276046, gi\|... - gi\|47523386\|ref\|NP_999312.1\| phorbol-12-myristate-13-acetate-induced protein 1 [Sus scrofa], gi\|1127...	94.0	[0..1]	[54..121]
APR_CANLF - Phorbol-12-myristate-13-acetate-induced protein 1 OS=Canis lupus familiaris GN=PMAIP1 PE=3 SV=1	86.0	[0..1]	[54..1]
APR_MOUSE - Phorbol-12-myristate-13-acetate-induced protein 1 OS=Mus musculus GN=Pmaip1 PE=1 SV=1	79.0	[0..1]	[54..50]
APR_RAT - Phorbol-12-myristate-13-acetate-induced protein 1 OS=Rattus norvegicus GN=Pmaip1 PE=3 SV=1	72.0	[0..1]	[54..50]

Back

Predicted Domain #1

Region A:
Residues: [1-54]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGKKARKNA QPSPARAPAE LEVECATQLR RFGDKLNFRQ KLLNLISKLF CSGT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits