YRC Public Data Repository - Protein Structure Prediction

Protein:	MED4
Organism:	Homo sapiens
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED4.

Description	E-value	Query Range	Subject Range
gi\|109120699 - gi\|109120699\|ref\|XP_001100111.1\| PREDICTED: similar to Mediator complex subunit 4 (Mediator of RNA p...	0.0	[1..258]	[1..258]
gi\|74216864 - gi\|74216864\|dbj\|BAE26554.1\| unnamed protein product [Mus musculus]	0.0	[1..258]	[10..267]
MED4_RAT - Mediator of RNA polymerase II transcription subunit 4 OS=Rattus norvegicus GN=Med4 PE=2 SV=1	0.0	[1..258]	[1..258]
gi\|62897595 - gi\|62897595\|dbj\|BAD96737.1\| mediator of RNA polymerase II transcription, subunit 4 homolog [Homo sap...	0.0	[1..258]	[1..258]
MED4_BOVIN - Mediator of RNA polymerase II transcription subunit 4 OS=Bos taurus GN=MED4 PE=2 SV=1	0.0	[1..258]	[1..258]

Back

Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASSSGEKE KERLGGGLGV AGGNSTRERL LSALEDLEVL SRELIEMLAI SRNQKLLQAG  60
   61 EENQVLELLI HRDGEFQELM KLALNQGKIH HEMQVLEKEV EKRDSDIQQL QKQLKEAEQI 120
  121 LATAVYQAKE KLKSIEKARK GAISSEEIIK YAHRISASNA VCAPLTWVPG DPRRPYPTDL 180
  181 EMRSGLLGQM NNPSTNGVNG HLPGDALAAG RLPDVLAPQY PWQSNDMSMN MLPPNHSSDF 240
  241 LLEPPGHNKE NEDDVEIMST DSSSSSSESD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.7
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits