YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ubc-21
Organism: Caenorhabditis elegans
Length: 229 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubc-21.

Description E-value Query
Range
Subject
Range
gi|83273428 - gi|83273428|ref|XP_729393.1| ubiquitin conjugating enzyme [Plasmodium yoelii yoelii str. 17XNL]
gi|23487093 - gi|23487093|gb|EAA20958.1| ubiquitin conjugating enzyme [Plasmodium yoelii yoelii]
187.0 [0..16] [229..4]

Back

Predicted Domain #1
Region A:
Residues: [1-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSKLNKMQ FSDKMSNLAL ARVTRKCKEV ANASDITEAG IHVEIKENNL MDIKGFIKGP  60
   61 EGTPYAGGTF EIKVDIPEHY PFEPPKVTEI IFHIRAFEYI QAKFVTRIWH PNISSQTGTI 120
  121 CLDILKDKWT ASLTLRTVLL SLQAMLCSPE PSDPQDAVVA KQFINNYPMF TATAVYWTSY 180
  181 FANSKKDVEP DFNRKVGRLI EMGIRETEAI VYLSCNNWKL EQALQFIFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.522879
Match: 2pwqA
Description: No description for 2pwqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle