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View Structure Prediction Details

Protein: CE40070
Organism: Caenorhabditis elegans
Length: 284 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40070.

Description E-value Query
Range
Subject
Range
gi|62128779, gi|... - gi|62181146|ref|YP_217563.1| ribonuclease III [Salmonella enterica subsp. enterica serovar Choleraes...
198.0 [0..1] [212..28]

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Predicted Domain #1
Region A:
Residues: [1-284]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPNFPTLP INPARSQGPK CKGEQKAAVD PLTVLSPLLN EKSVISIIHE KAQQLKLKIN  60
   61 FEVLEEGGDQ HNRQYAVRYT LVADDNVVKA KAMGKGKNKK SAQQEACTQL LATVEHLTLA 120
  121 ANVRKTEKNQ ATMKKDEEID VLNPVAQLNE YAQKFYKKYP TFEFVKEQAV GKHREFVIQA 180
  181 TFENKTLEGR GPSKIISKRA AAEAILESIG FIKPSLSKPD TSEAAHLSPE QTDTNEKRTL 240
  241 SPDTKELTVT FNSTELTDIN EKQKVQMEKV HACLSEFEII DTLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 1yykA
Description: Crystal structure of RNase III from Aquifex Aeolicus complexed with double-stranded RNA at 2.5-angstrom resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.602312874472495 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.00837845982391983 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle