YRC Public Data Repository - Protein Structure Prediction

Protein:	SSU72
Organism:	Homo sapiens
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSU72.

Description	E-value	Query Range	Subject Range
SSU72_CHICK - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1	0.0	[1..194]	[1..194]
SSU72_MOUSE - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=1 SV=1	0.0	[1..194]	[1..194]
SSU72_BOVIN - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1	0.0	[1..194]	[1..194]
SSU72_RAT - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 S...	0.0	[1..194]	[1..194]
gi\|57086817 - gi\|57086817\|ref\|XP_536707.1\| PREDICTED: similar to Ssu72 RNA polymerase II CTD phosphatase homolog i...	0.0	[1..194]	[1..194]
gi\|12751087 - gi\|12751087\|gb\|AAK07538.1\|AF277178_1 PNAS-120 [Homo sapiens]	0.0	[1..194]	[1..194]
gi\|213625570, gi... - gi\|62858895\|ref\|NP_001016264.1\| hypothetical protein LOC549018 [Xenopus (Silurana) tropicalis], gi\|2...	0.0	[1..194]	[1..194]
SSU72_XENLA - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Xenopus laevis GN=ssu72 PE=2 SV=1	0.0	[1..194]	[1..194]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSPLRVAV VCSSNQNRSM EAHNILSKRG FSVRSFGTGT HVKLPGPAPD KPNVYDFKTT  60
   61 YDQMYNDLLR KDKELYTQNG ILHMLDRNKR IKPRPERFQN CKDLFDLILT CEERVYDQVV 120
  121 EDLNSREQET CQPVHVVNVD IQDNHEEATL GAFLICELCQ CIQHTEDMEN EIDELLQEFE 180
  181 EKSGRTFLHT VCFY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.23
Match:	2cwdA
Description:	No description for 2cwdA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits