YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|14916501, gi\|...
Organism:	Homo sapiens
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14916501, gi|....

Description	E-value	Query Range	Subject Range
gi\|114631371 - gi\|114631371\|ref\|XP_001150938.1\| PREDICTED: hypothetical protein LOC466117 isoform 5 [Pan troglodyte...	229.0	[0..1]	[130..1]
gi\|109114378 - gi\|109114378\|ref\|XP_001102044.1\| PREDICTED: similar to ribosomal protein S24 isoform 1 [Macaca mulat...	202.0	[0..1]	[130..1]
gi\|37779110 - gi\|37779110\|gb\|AAP20215.1\| 40S ribosomal protein S24 [Pagrus major]	195.0	[0..1]	[130..1]
RS24_ICTPU - 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1	194.0	[0..1]	[130..1]
RS24_TAKRU - 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1	194.0	[0..1]	[130..1]
gi\|94400218 - gi\|94400218\|ref\|XP_622670.3\| PREDICTED: similar to ribosomal protein S24 [Mus musculus]	193.0	[0..1]	[130..1]
RS24_ORYLA - 40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1	193.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDTVTIRTR KFMTNRLLQR KQMVIDVLHP GKATVPKTEI REKLAKMYKT TPDVIFVFGF  60
   61 RTHFGGGKTT GFGMIYDSLD YAKKNEPKHR LARHGLYEKK KTSRKQRKER KNRMKKVRGT 120
  121 AKANVGAGKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.09691
Match:	1xn9A
Description:	Solution Structure of Methanosarcina mazei Protein RPS24E: The Northeast Structural Genomics Consortium Target MaR11
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits