YRC Public Data Repository - Protein Structure Prediction

Protein:	SYNJ2BP
Organism:	Homo sapiens
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYNJ2BP.

Description	E-value	Query Range	Subject Range
gi\|114653718 - gi\|114653718\|ref\|XP_001145530.1\| PREDICTED: synaptojanin 2 binding protein isoform 4 [Pan troglodyte...	7.0E-36	[1..145]	[1..145]
SYJ2B_MOUSE - Synaptojanin-2-binding protein OS=Mus musculus GN=Synj2bp PE=1 SV=1 gi\|157169838 - gi\|157169838\|gb\|AAI52862.1\| Synaptojanin 2 binding protein [synthetic construct]	1.0E-35	[1..145]	[1..145]
SYJ2B_BOVIN - Synaptojanin-2-binding protein OS=Bos taurus GN=SYNJ2BP PE=2 SV=1	3.0E-35	[1..145]	[1..145]
gi\|8922964, gi\|7... - gi\|8922964\|ref\|NP_060843.1\| synaptojanin 2 binding protein [Homo sapiens], gi\|7023826\|dbj\|BAA92098.1...	6.0E-35	[1..145]	[1..145]
gi\|57090687 - gi\|57090687\|ref\|XP_547879.1\| PREDICTED: similar to Synaptojanin 2 binding protein (Mitochondrial out...	5.0E-34	[1..145]	[1..145]
SYJ2B_RAT - Synaptojanin-2-binding protein OS=Rattus norvegicus GN=Synj2bp PE=1 SV=2	6.0E-34	[1..145]	[1..145]
gi\|109084124 - gi\|109084124\|ref\|XP_001111113.1\| PREDICTED: synaptojanin 2 binding protein isoform 3 [Macaca mulatta... CCDS9803.1_1 - null	9.0E-34	[1..145]	[1..145]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGRVDYLVT EEEINLTRGP SGLGFNIVGG TDQQYVSNDS GIYVSRIKEN GAAALDGRLQ  60
   61 EGDKILSVNG QDLKNLLHQD AVDLFRNAGY AVSLRVQHRL QVQNGPIGHR GEGDPSGIPI 120
  121 FMVLVPVFAL TMVAAWAFMR YRQQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2enoA
Description:	No description for 2enoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits