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View Structure Prediction Details

Protein: CE39923
Organism: Caenorhabditis elegans
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39923.

Description E-value Query
Range
Subject
Range
gi|47226142 - gi|47226142|emb|CAG04516.1| unnamed protein product [Tetraodon nigroviridis]
248.0 [0..4] [218..491]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIPELPYDD DDLSTLERGL RQYMITKIVR EAVPRPNSDA KNDARMIELK EYATFMEKKS  60
   61 FEKVQTKDEY YAELARIILS MQKHLQSRPK GSYEDPYSNI PPSHELADFL GLSAQE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.38
Match: 1sb0A
Description: Solution structure of the KIX domain of CBP bound to the transactivation domain of c-Myb
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [117-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDEFYLLHPH RLLKPNAKSR ITRRIRIHVI DKLGLMLFPA PDQNAYYDGR MDRIIRKLRN  60
   61 LEAEAFRECI DCDDYYNLAS IKAYKLHKTM KKNGEHYVDH EVKYPAIHIY TSANSFESFA 120
  121 LAESGIVIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.69897
Match: 1sb0A
Description: Solution structure of the KIX domain of CBP bound to the transactivation domain of c-Myb
Matching Structure (courtesy of the PDB):

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