YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE39976
Organism: Caenorhabditis elegans
Length: 344 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39976.

Description E-value Query
Range
Subject
Range
gi|114600955 - gi|114600955|ref|XP_001139596.1| PREDICTED: RGM domain family, member B isoform 2 [Pan troglodytes]
460.0 [0..14] [298..137]

Back

Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRHWKEFEC EKWESCNDNS HVKRKHVNTC YFNPPPSNRK LKYCSLFGDP HLIMFNGSVQ  60
   61 TCSEEGARPL VDNRYFLVQV TNRNVRGEAL TTTVTKVTVL VRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNCTASLRYE ASSDEEGLPR GFVDGTTFQM TSKHSVEVLW QDDNYVEIAL HFIHSSIHIR  60
   61 RQGPYLSVSV RAPTIVLETG GDVARELCWS GCRKSSRIPA ELAVEMTKKF AECYRRRVHV 120
  121 PKKVAEET

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [232-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFLSEQKVLP IYDRCKDIGN IGVFFDACVF DLMFTGDDYL VHLSRAAESD FRRLAPHHFQ  60
   61 SHVTQQHARF QKENQHKNHI NQSEIFKKCI PSKSIRFYPF LAIFFFALLS LLC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle