YRC Public Data Repository - Protein Structure Prediction

Protein:	CE39987
Organism:	Caenorhabditis elegans
Length:	357 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39987.

Description	E-value	Query Range	Subject Range
gi\|187034003, gi... - gi\|39592732\|emb\|CAE62346.1\| Hypothetical protein CBG06422 [Caenorhabditis briggsae], gi\|187034003\|em...	581.0	[0..1]	[330..12]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTDDFNLLL RSIEGQFQIN LAPSWAKESD QGGVQRMLAD DAITVTNVRF EEDPHGRVNS  60
   61 NSNNKTLSTI CEYITCQGIE QLCIDSFVPF GHCCPICGTR IWLAAMDLEI QKAKAVVFEV 120
  121 LIELETESKV FATVERTAIG EMQSEYEIVL CSSHNVPFDE DFHKTASSRI LERLTVTKKT 180
  181 NRLQTVFKAT IFSSKIDRTI QTLSKVVACL IYFSILAALV GMYAYQNVEL RVSRQNPFTP 240
  241 IVKYRRQADD VAIEMEEAME DIQSDSTLEG DTQM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [275-357]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LISSVETPEI ANSEDIEDLR NVNPNFELDH IEEDGGIVAG EEYEMTATEK FDQCEVLVDK  60
   61 TSIANLISVE RPENKLVPKI LKF