YRC Public Data Repository - Protein Structure Prediction

Protein:	SERINC3
Organism:	Homo sapiens
Length:	473 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SERINC3.

Description	E-value	Query Range	Subject Range
gi\|55732883 - gi\|55732883\|emb\|CAH93133.1\| hypothetical protein [Pongo abelii] SERC3_PONAB - Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1	0.0	[1..473]	[1..473]
gi\|62897405 - gi\|62897405\|dbj\|BAD96643.1\| tumor differentially expressed protein 1 variant [Homo sapiens]	0.0	[1..473]	[1..473]
gi\|109091875 - gi\|109091875\|ref\|XP_001110325.1\| PREDICTED: tumor differentially expressed protein 1 isoform 5 [Maca...	0.0	[1..473]	[1..473]
gi\|114682112 - gi\|114682112\|ref\|XP_001152172.1\| PREDICTED: tumor differentially expressed protein 1 isoform 3 [Pan ...	0.0	[1..473]	[1..473]
gi\|73992485 - gi\|73992485\|ref\|XP_534427.2\| PREDICTED: similar to Tumor differentially expressed protein 1 [Canis f...	0.0	[1..473]	[1..474]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVLGVFSL ASWVPCLCSG ASCLLCSCCP NSKNSTVTRL IYAFILLLST VVSYIMQRKE  60
   61 METYLKKIPG FCEGGFKIHE ADINADKDCD VLVGYK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVYRISFAMA IFFFVFSLLM FKVKTSKDLR AAVHNGFWFF KIAALIGIMV GSFYIPGGYF  60
   61 SSVWFVVGMI GAALFILIQL VLLVDFAHSW NESWVNRMEE G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [198-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPRLWYAALL SFTSAFYILS IICVGLLYTY YTKPDGCTEN KFFISINLIL CVVASIISIH  60
   61 PKIQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [262-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHQPRSGLLQ SSLITLYTMY LTWSAMSNEP DRSCNPNLMS FITRITAPTL APGNSTAVVP  60
   61 TPTPPSKSGS LLDSDNFIGL FVFVLCLLYS SIRTSTNSQV DKLTLSGSDS VILGDTTTSG 120
  121 ASDEEDGQPR RAVDNEKEGV QYSYSLFHLM LCLASLYIMM TLTSWYSPDA KFQSMTSKWP 180
  181 AVWVKISSSW VCLLLYVWTL VAPLVLTSRD FS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits