YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUFA6
Organism:	Homo sapiens
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUFA6.

Description	E-value	Query Range	Subject Range
gi\|56202717, gi\|... - gi\|56202717\|emb\|CAI19953.1\| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa [Homo sapie... gi\|109451994, gi... - gi\|109451994\|emb\|CAK54859.1\| NDUFA6 [synthetic construct], gi\|109451398\|emb\|CAK54560.1\| NDUFA6 [synt... ENSPTRT00000026990 - null	210.0	[0..1]	[128..27]
NDUA6_BOVIN - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus GN=NDUFA6 PE=1 SV=2	206.0	[0..1]	[128..1]
NDUA6_PONAB - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Pongo abelii GN=NDUFA6 PE=2 SV=3 NDUA6_PONPY - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Pongo pygmaeus GN=NDUFA6 PE=2 SV=3	205.0	[0..1]	[128..1]
gi\|109094394 - gi\|109094394\|ref\|XP_001106675.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subco...	205.0	[0..1]	[128..27]
gi\|149065780, gi... - gi\|27663138\|ref\|XP_235518.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomple...	204.0	[0..2]	[128..4]
gi\|60833616 - gi\|60833616\|gb\|AAX37056.1\| NADH dehydrogenase 1 alpha subcomplex 6 [synthetic construct]	204.0	[0..1]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSGVRQAT STASTFVKPI FSRDMNEAKR RVRELYRAWY REVPNTVHQF QLDITVKMGR  60
   61 DKVREMFMKN AHVTDPRVVD LLVIKGKIEL EETIKVWKQR THVMRFFHET EAPRPKDFLS 120
  121 KFYVGHDP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.79588
Match:	PF05347.6
Description:	No description for PF05347.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.815	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.759	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.740	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.695	N/A	N/A	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.649	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.644	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.635	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.604	N/A	N/A	d.14.1	Ribosomal protein S5 domain 2-like
View	Download	0.596	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.486	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.454	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.302	N/A	N/A	a.130.1	Chorismate mutase II
View	Download	0.226	N/A	N/A	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits