YRC Public Data Repository - Protein Structure Prediction

Protein:	B9D1
Organism:	Homo sapiens
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for B9D1.

Description	E-value	Query Range	Subject Range
B9D1_MOUSE - B9 domain-containing protein 1 OS=Mus musculus GN=B9d1 PE=1 SV=1	2.0E-81	[1..204]	[1..204]
B9D1_RAT - B9 domain-containing protein 1 OS=Rattus norvegicus GN=B9d1 PE=2 SV=1	1.0E-80	[1..204]	[1..204]
gi\|109113603 - gi\|109113603\|ref\|XP_001100199.1\| PREDICTED: similar to B9 protein isoform 3 [Macaca mulatta]	2.0E-79	[1..204]	[1..204]
gi\|76644175, gi\|... - gi\|76644175\|ref\|XP_581610.2\| PREDICTED: similar to B9 [Bos taurus], gi\|194675998\|ref\|XP_001790645.1\|...	2.0E-78	[1..204]	[1..204]
gi\|73956168 - gi\|73956168\|ref\|XP_536657.2\| PREDICTED: similar to B9 protein [Canis familiaris]	2.0E-76	[1..204]	[220..423]
gi\|114668724 - gi\|114668724\|ref\|XP_001153713.1\| PREDICTED: similar to B9 isoform 6 [Pan troglodytes]	9.0E-71	[22..204]	[52..234]
B9D1_DANRE - B9 domain-containing protein 1 OS=Danio rerio GN=b9d1 PE=2 SV=1	1.0E-64	[1..189]	[1..188]
B9D1_XENLA - B9 domain-containing protein 1 OS=Xenopus laevis GN=b9d1 PE=2 SV=1	3.0E-62	[3..198]	[2..198]
gi\|50755631 - gi\|50755631\|ref\|XP_414829.1\| PREDICTED: similar to B9 protein; likely ortholog of mouse endothelial ...	4.0E-62	[2..198]	[3..196]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASPSVFL LMVNGQVESA QFPEYDDLYC KYCFVYGQDW APTAGLEEGI SQITSKSQDV  60
   61 RQALVWNFPI DVTFKSTNPY GWPQIVLSVY GPDVFGNDVV RGYGAVHVPF SPGRHKRTIP 120
  121 MFVPESTSKL QKFTSWFMGR RPEYTDPKVV AQGEGREVTR VRSQGFVTLL FNVVTKDMRK 180
  181 LGYDTGPSDT QGVLGPSPPQ SFPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	2dmhA
Description:	No description for 2dmhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits