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View Structure Prediction Details

Protein: GHRL
Organism: Homo sapiens
Length: 117 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GHRL.

Description E-value Query
Range
Subject
Range
GHRL_FELCA - Appetite-regulating hormone OS=Felis catus GN=GHRL PE=1 SV=1
174.0 [0..1] [117..1]
gi|27357900 - gi|27357900|gb|AAO06965.1|AF442491_1 ghrelin preproprotein [Meriones unguiculatus]
170.0 [0..1] [117..1]
GHRL_CANLF - Appetite-regulating hormone OS=Canis lupus familiaris GN=GHRL PE=3 SV=1
169.0 [0..1] [117..1]
gi|34014150 - gi|34014150|gb|AAQ56122.1| preproghrelin [Anser sp.]
164.0 [0..1] [114..1]
gi|34014154 - gi|34014154|gb|AAQ56124.1| preproghrelin [Dromaius novaehollandiae]
163.0 [0..1] [113..1]
gi|50300448 - gi|50300448|dbj|BAD29731.1| preproghrelin-2 [Trachemys scripta elegans]
162.0 [0..1] [113..1]
gi|34014152 - gi|34014152|gb|AAQ56123.1| preproghrelin [Anas platyrhynchos]
160.0 [0..1] [114..1]
gi|13603381 - gi|13603381|gb|AAK30002.1| preproghrelin des14Q [Sus scrofa]
159.0 [0..1] [117..1]

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Predicted Domain #1
Region A:
Residues: [1-62]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSPGTVCSL LLLGMLWLDL AMAGSSFLSP EHQRVQQRKE SKKPPAKLQP RALAGWLRPE  60
   61 DG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [63-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQAEGAEDEL EVRFNAPFDV GIKLSGVQYQ QHSQALGKFL QDILWEEAKE APADK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 30.552842
Match: PF04643.3
Description: No description for PF04643.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle