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View Structure Prediction Details

Protein: CE40186
Organism: Caenorhabditis elegans
Length: 431 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40186.

Description E-value Query
Range
Subject
Range
gi|91084087 - gi|91084087|ref|XP_968449.1| PREDICTED: similar to sodium/solute symporter [Tribolium castaneum]
298.0 [0..1] [426..142]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVLYAPSV ALSPVLQINK WYLVLIFGCT TTLYTCLGGL KAVVWTDSLQ AVIMYTGVFT  60
   61 LIYKGLSHPR VGGLERVLSI AWDSG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RISELGRMDW RIDQYNSLWI NLFSGTIVWL ASFGVNQLAI QRYASLPSLK VAQSIIIYTL  60
   61 APFTVLCSIV AFVGFIALAY FYNCNPLETG EVKES

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [181-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DHITISFARD ILQPTPGLFG LYVSCIMSAT LSTLSSGMNS MAAAIYEDFL KNSLDGKITD  60
   61 TGATRLNKII VLICGLSSTG LAFLAEV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [268-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGGSLRICIS VMGAMSGPMV AIFVLALFFP KSGSKSCLIS FFLSNLFCLI ICIANYIQDP  60
   61 YHDLFLPTNT TLEGCNGNSN FTIRMMPTYD AHYGNPDTLY ISRISTYSYA GVGFVLMIII 120
  121 GWIASLFEES DHKVEKIRHL TFSGRNEPWP DTHHEFDHFL KEIK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle