YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|26051214, gi\|...
Organism:	Homo sapiens
Length:	492 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26051214, gi|....

Description	E-value	Query Range	Subject Range
IPI:IPI00777454.... - Tax_Id=10116 Gene_Symbol=Camk2b 58 kDa protein gi\|56205663, gi\|... - gi\|56207099\|emb\|CAI25259.1\| calcium/calmodulin-dependent protein kinase II, beta [Mus musculus], gi\|...	0.0	[1..492]	[1..518]
gi\|109075464 - gi\|109075464\|ref\|XP_001095780.1\| PREDICTED: similar to calcium/calmodulin-dependent protein kinase I...	0.0	[1..492]	[1..485]
gi\|26051208, gi\|... - gi\|6688228\|emb\|CAB65122.1\| calcium/calmodulin dependent protein kinase II beta 4 [Homo sapiens], gi\|...	0.0	[1..492]	[1..518]
gi\|117616248 - gi\|117616248\|gb\|ABK42142.1\| calmodulin-dependent protein kinase II beta [synthetic construct] KCC2B_MOUSE - Calcium/calmodulin-dependent protein kinase type II subunit beta OS=Mus musculus GN=Camk2b PE=1 SV=2 gi\|149047659, gi... - gi\|149047661\|gb\|EDM00331.1\| calcium/calmodulin-dependent protein kinase II, beta, isoform CRA_a [Rat...	0.0	[1..492]	[1..542]
gi\|3241847, gi\|1... - gi\|3241847\|dbj\|BAA28869.1\| calmodulin-dependent protein kinase II-gamma dash2 [Oryctolagus cuniculus...	0.0	[1..492]	[1..518]

Back

Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTVTCTRF TDEYQLYEDI GKGAFSVVRR CVKLCTGHEY AAKIINTKKL SARDHQKLER  60
   61 EARICRLLKH SNIVRLHDSI SEEGFHYLVF DLVTGGELFE DIVAREYYSE ADASHCIQQI 120
  121 LEAVLHCHQM GVVHRDLKPE NLLLASKCKG AAVKLADFGL AIEVQGDQQA WFGFAGTPGY 180
  181 LSPEVLRKEA YGKPVDIWAC GVILYILLVG YPPFWDEDQH KLYQQIKAGA YDFPSPEWDT 240
  241 VTPEAKNLIN QMLTINPAKR ITAHEALKHP WVCQRSTVAS MMH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.39794
Match:	2v7oA
Description:	No description for 2v7oA was found.

Predicted Domain #2

Region A:
Residues: [284-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQETVECLKK FNARRKLKGA ILTTMLATRN FSVGRQTTAP ATMSTAASGT TMGLVEQAKS  60
   61 LLNKKADGVK EPQTTVIHNP VDGIKESSDS ANTTIEDE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [382-492]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAKARKQEII KTTEQLIEAV NNGDFEAYAF YFENLLAKNS KPIHTTILNP HVHVIGEDAA  60
   61 CIAYIRLTQY IDGQGRPRTS QSEETRVWHR RDGKWQNVHF HCSGAPVAPL Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	2ux0A
Description:	No description for 2ux0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits