YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|26051208, gi\|...
Organism:	Homo sapiens
Length:	518 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26051208, gi|....

Description	E-value	Query Range	Subject Range
gi\|56207097, gi\|... - gi\|56207097\|emb\|CAI25257.1\| calcium/calmodulin-dependent protein kinase II, beta [Mus musculus], gi\|...	0.0	[1..518]	[1..518]
gi\|5326764, gi\|5... - gi\|5326764\|gb\|AAD42038.1\|AF083419_1 calcium/calmodulin-dependent protein kinase II beta e subunit [H...	0.0	[1..518]	[1..517]
gi\|3241847, gi\|1... - gi\|3241847\|dbj\|BAA28869.1\| calmodulin-dependent protein kinase II-gamma dash2 [Oryctolagus cuniculus...	0.0	[1..518]	[1..518]
gi\|73953037 - gi\|73953037\|ref\|XP_863819.1\| PREDICTED: similar to calcium/calmodulin-dependent protein kinase II ga...	0.0	[1..518]	[1..515]
gi\|46048967, gi\|... - gi\|46048967\|ref\|NP_989625.1\| calcium/calmodulin-dependent protein kinase II beta [Gallus gallus], gi...	0.0	[1..518]	[1..540]

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Predicted Domain #1

Region A:
Residues: [1-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTVTCTRF TDEYQLYEDI GKGAFSVVRR CVKLCTGHEY AAKIINTKKL SARDHQKLER  60
   61 EARICRLLKH SNIVRLHDSI SEEGFHYLVF DLVTGGELFE DIVAREYYSE ADASHCIQQI 120
  121 LEAVLHCHQM GVVHRDLKPE NLLLASKCKG AAVKLADFGL AIEVQGDQQA WFGFAGTPGY 180
  181 LSPEVLRKEA YGKPVDIWAC GVILYILLVG YPPFWDEDQH KLYQQIKAGA YDFPSPEWDT 240
  241 VTPEAKNLIN QMLTINPAKR ITAHEALKHP WVCQRSTVAS MMHRQETVEC LKKFNARRKL 300
  301 KGAILTTMLA TRNFSAAKSL LNKKADGVKP QTNSTKNSAA ATS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.221849
Match:	2v7oA
Description:	No description for 2v7oA was found.

Predicted Domain #2

Region A:
Residues: [344-518]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKGTLPPAAL EPQTTVIHNP VDGIKESSDS ANTTIEDEDA KARKQEIIKT TEQLIEAVNN  60
   61 GDFEAYAKIC DPGLTSFEPE ALGNLVEGMD FHRFYFENLL AKNSKPIHTT ILNPHVHVIG 120
  121 EDAACIAYIR LTQYIDGQGR PRTSQSEETR VWHRRDGKWQ NVHFHCSGAP VAPLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.154902
Match:	2ux0A
Description:	No description for 2ux0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits