YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL30
Organism:	Homo sapiens
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL30.

Description	E-value	Query Range	Subject Range
gi\|94394262, gi\|... - gi\|94394262\|ref\|XP_980411.1\| PREDICTED: similar to ribosomal protein L30 [Mus musculus], gi\|94393498...	160.0	[0..1]	[115..47]
gi\|62901830 - gi\|62901830\|gb\|AAY18866.1\| RPL30 [synthetic construct]	156.0	[0..2]	[115..13]
gi\|73955920 - gi\|73955920\|ref\|XP_851334.1\| PREDICTED: similar to ribosomal protein L30 [Canis familiaris]	154.0	[0..1]	[115..1]
gi\|197127743, gi... - gi\|197127744\|gb\|ACH44242.1\| putative ribosomal protein L30 [Taeniopygia guttata], gi\|197127743\|gb\|AC... gi\|86355135 - gi\|86355135\|dbj\|BAE78802.1\| ribosomal protein L30 [Pelodiscus sinensis] RL30_OPHHA - 60S ribosomal protein L30 OS=Ophiophagus hannah GN=RPL30 PE=3 SV=2 RL30_CHICK - 60S ribosomal protein L30 OS=Gallus gallus GN=RPL30 PE=3 SV=2	152.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAAKKTKKS LESINSRLQL VMKSGKYVLG YKQTLKMIRQ GKAKLVILAN NCPALRKSEI  60
   61 EYYAMLAKTG VHHYSGNNIE LGTACGKYYR VCTLAIIDPG DSDIIRSMPE QTGEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1yshC
Description:	Localization and dynamic behavior of ribosomal protein L30e
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits